The two sides of YY1 in cancer: a friend and a foe

S Sarvagalla, SP Kolapalli, S Vallabhapurapu - Frontiers in oncology, 2019 - frontiersin.org
Yin Yang 1 (YY1), a dual function transcription factor, is known to regulate transcriptional
activation and repression of many genes associated with multiple cellular processes …

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

A Sandelin, P Carninci, B Lenhard, J Ponjavic… - Nature Reviews …, 2007 - nature.com
The identification and characterization of mammalian core promoters and transcription start
sites is a prerequisite to understanding how RNA polymerase II transcription is controlled …

[HTML][HTML] A single-cell atlas of chromatin accessibility in the human genome

K Zhang, JD Hocker, M Miller, X Hou, J Chiou… - Cell, 2021 - cell.com
Current catalogs of regulatory sequences in the human genome are still incomplete and lack
cell type resolution. To profile the activity of gene regulatory elements in diverse cell types …

Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration

X Wei, S Fu, H Li, Y Liu, S Wang, W Feng, Y Yang… - Science, 2022 - science.org
The molecular mechanism underlying brain regeneration in vertebrates remains elusive. We
performed spatial enhanced resolution omics sequencing (Stereo-seq) to capture spatially …

A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA‐seq profiling

AV Klepikova, AS Kasianov, ES Gerasimov… - The Plant …, 2016 - Wiley Online Library
Arabidopsis thaliana is a long established model species for plant molecular biology,
genetics and genomics, and studies of A. thaliana gene function provide the basis for …

The landscape of accessible chromatin in mammalian preimplantation embryos

J Wu, BO Huang, HE Chen, Q Yin, Y Liu, Y Xiang… - Nature, 2016 - nature.com
In mammals, extensive chromatin reorganization is essential for reprogramming terminally
committed gametes to a totipotent state during preimplantation development. However, the …

A promoter-level mammalian expression atlas

Nature, 2014 - nature.com
Regulated transcription controls the diversity, developmental pathways and spatial
organization of the hundreds of cell types that make up a mammal. Using single-molecule …

Chromatin analysis in human early development reveals epigenetic transition during ZGA

J Wu, J Xu, B Liu, G Yao, P Wang, Z Lin, B Huang… - Nature, 2018 - nature.com
Upon fertilization, drastic chromatin reorganization occurs during preimplantation
development. However, the global chromatin landscape and its molecular dynamics in this …

Comparison of the transcriptional landscapes between human and mouse tissues

S Lin, Y Lin, JR Nery, MA Urich… - Proceedings of the …, 2014 - National Acad Sciences
Although the similarities between humans and mice are typically highlighted,
morphologically and genetically, there are many differences. To better understand these two …

MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction

T Kelliher, D Starr, L Richbourg, S Chintamanani… - Nature, 2017 - nature.com
Sexual reproduction in flowering plants involves double fertilization, the union of two sperm
from pollen with two sex cells in the female embryo sac. Modern plant breeders increasingly …