Two decades of association mapping: Insights on disease resistance in major crops

SS Gangurde, A Xavier, YD Naik, UC Jha… - Frontiers in Plant …, 2022 - frontiersin.org
Climate change across the globe has an impact on the occurrence, prevalence, and severity
of plant diseases. About 30% of yield losses in major crops are due to plant diseases; …

Increasing sustainability for rice production systems

A Nawaz, AU Rehman, A Rehman, S Ahmad… - Journal of Cereal …, 2022 - Elsevier
Rice (Oryza sativa L.) is the staple food for millions of people in Asia and the world; however,
it is also the largest consumer of freshwater resources worldwide. More than 75% of the …

Association mapping in rice: basic concepts and perspectives for molecular breeding

H Verdeprado, T Kretzschmar, H Begum… - Plant Production …, 2018 - Taylor & Francis
In the last decade, association mapping (AM) has become a well-established method to
detect genes and quantitative trait loci (QTLs) associated with agronomically important traits …

Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome‐wide association study

A Wang, X Shu, X Jing, C Jiao, L Chen… - Plant Biotechnology …, 2021 - Wiley Online Library
Rice sheath blight (RSB) is an economically significant disease affecting rice yield
worldwide. Genetic resistance to RSB is associated with multiple minor genes, with each …

Marker assisted forward breeding to combine multiple biotic-abiotic stress resistance/tolerance in rice

S Dixit, UM Singh, AK Singh, S Alam… - Rice, 2020 - Springer
Background Unfavorable climatic changes have led to an increased threat of several biotic
and abiotic stresses over the past few years. Looking at the massive damage caused by …

Xa1 allelic R genes activate rice blight resistance suppressed by interfering TAL effectors

C Ji, Z Ji, B Liu, H Cheng, H Liu, S Liu, B Yang… - Plant …, 2020 - cell.com
Xanthomonas oryzae pathovar oryzae (Xoo) uses transcription activator-like effectors
(TALEs) to cause bacterial blight (BB) in rice. In turn, rice has evolved several mechanisms …

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

JD Arbelaez, MS Dwiyanti, E Tandayu, K Llantada… - Rice, 2019 - Springer
Background While a multitude of genotyping platforms have been developed for rice, the
majority of them have not been optimized for breeding where cost, turnaround time …

Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping

TD Do, TD Vuong, D Dunn, M Clubb, B Valliyodan… - BMC genomics, 2019 - Springer
Background Salinity is an abiotic stress that negatively affects soybean [Glycine max (L.)
Merr.] seed yield. Although a major gene for salt tolerance was identified and consistently …

Identification of novel recessive gene xa44(t) conferring resistance to bacterial blight races in rice by QTL linkage analysis using an SNP chip

SM Kim - Theoretical and applied genetics, 2018 - Springer
Key message Using QTL analysis and fine mapping, the novel recessive gene xa44 (t)
conferring resistance to BB was identified and the expression level of the gene was …

Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches

C de la Fuente Cantó, Y Vigouroux - BMC genomics, 2022 - Springer
Background Bulk segregant analysis (BSA) combined with next generation sequencing is a
powerful tool to identify quantitative trait loci (QTL). The impact of the size of the study …