Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

A decade of riboswitches

A Serganov, E Nudler - Cell, 2013 - cell.com
Riboswitches were discovered in 2002 in bacteria as RNA-based intracellular sensors of
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …

Riboswitch diversity and distribution

PJ McCown, KA Corbino, S Stav, ME Sherlock… - Rna, 2017 - rnajournal.cshlp.org
Riboswitches are commonly used by bacteria to detect a variety of metabolites and ions to
regulate gene expression. To date, nearly 40 different classes of riboswitches have been …

Selective small-molecule inhibition of an RNA structural element

JA Howe, H Wang, TO Fischmann, CJ Balibar, L Xiao… - Nature, 2015 - nature.com
Riboswitches are non-coding RNA structures located in messenger RNAs that bind
endogenous ligands, such as a specific metabolite or ion, to regulate gene expression. As …

Prospects for riboswitch discovery and analysis

RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …

Nucleotide biosynthesis: the base of bacterial pathogenesis

MI Goncheva, D Chin, DE Heinrichs - Trends in Microbiology, 2022 - cell.com
Most free-living organisms require the synthesis and/or acquisition of purines and
pyrimidines, which form the basis of nucleotides, to survive. In most bacteria, the nucleotides …

Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution

K Zhang, S Li, K Kappel, G Pintilie, Z Su… - Nature …, 2019 - nature.com
Specimens below 50 kDa have generally been considered too small to be analyzed by
single-particle cryo-electron microscopy (cryo-EM). The high flexibility of pure RNAs makes it …

Regulatory RNA in bacterial pathogens

K Papenfort, J Vogel - Cell host & microbe, 2010 - cell.com
Bacteria constitute a large and diverse class of infectious agents, causing devastating
diseases in humans, animals, and plants. Our understanding of gene expression control …

Riboswitches as drug targets for antibiotics

V Panchal, R Brenk - Antibiotics, 2021 - mdpi.com
Riboswitches reside in the untranslated region of RNA and regulate genes involved in the
biosynthesis of essential metabolites through binding of small molecules. Since their …

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

D Dar, M Shamir, JR Mellin, M Koutero… - Science, 2016 - science.org
INTRODUCTION Riboswitches and attenuators are cis-regulatory RNA elements (ribo-
regulators), which in most cases control bacterial gene expression via ligand-mediated …