[HTML][HTML] Recent insights into noncanonical 5′ capping and decapping of RNA

SK Doamekpor, S Sharma, M Kiledjian… - Journal of Biological …, 2022 - ASBMB
The 5′ N 7-methylguanosine cap is a critical modification for mRNAs and many other RNAs
in eukaryotic cells. Recent studies have uncovered an RNA 5′ capping quality surveillance …

Uncommon posttranslational modifications in proteomics: ADP‐ribosylation, tyrosine nitration, and tyrosine sulfation

A Bashyal, JS Brodbelt - Mass Spectrometry Reviews, 2024 - Wiley Online Library
Posttranslational modifications (PTMs) are covalent modifications of proteins that modulate
the structure and functions of proteins and regulate biological processes. The development …

[HTML][HTML] Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence

K Fukushima, DD Pollock - Nature Ecology & Evolution, 2023 - nature.com
On macroevolutionary timescales, extensive mutations and phylogenetic uncertainty mask
the signals of genotype–phenotype associations underlying convergent evolution. To …

Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs

S Sharma, E Grudzien-Nogalska… - Nucleic acids …, 2020 - academic.oup.com
We recently reported the presence of nicotinamide adenine dinucleotide (NAD)-capped
RNAs in mammalian cells and a role for DXO and the Nudix hydrolase Nudt12 in decapping …

Switch-like compaction of poly (ADP-ribose) upon cation binding

M Badiee, AL Kenet, LR Ganser… - Proceedings of the …, 2023 - National Acad Sciences
Poly (ADP-ribose)(PAR) is a homopolymer of adenosine diphosphate ribose that is added to
proteins as a posttranslational modification to regulate numerous cellular processes. PAR …

Role of NUDIX hydrolases in NAD and ADP-ribose metabolism in mammals

VA Kulikova, AA Nikiforov - Biochemistry (Moscow), 2020 - Springer
Proteins of the NUDIX hydrolase (NUDT) superfamily that cleave organic pyrophosphates
are found in all classes of organisms, from archaea and bacteria to higher eukaryotes. In …

[HTML][HTML] Selective monitoring of the protein-free ADP-ribose released by ADP-ribosylation reversal enzymes

S Kasson, N Dharmapriya, IK Kim - PLoS One, 2021 - journals.plos.org
ADP-ribosylation is a key post-translational modification that regulates a wide variety of
cellular stress responses. The ADP-ribosylation cycle is maintained by writers and erasers …

Structural insights into dpCoA-RNA decapping by NudC

W Zhou, Z Guan, F Zhao, Y Ye, F Yang, P Yin… - RNA biology, 2021 - Taylor & Francis
Various kinds of cap structures, such as m7G, triphosphate groups, NAD and dpCoA, protect
the 5′ terminus of RNA. The cap structures bond covalently to RNA and affect its stability …

[HTML][HTML] Proteomic Investigations of Two Pakistani Naja Snake Venoms Species Unravel the Venom Complexity, Posttranslational Modifications, and Presence of …

A Manuwar, B Dreyer, A Böhmert, A Ullah, Z Mughal… - Toxins, 2020 - mdpi.com
Latest advancement of omics technologies allows in-depth characterization of venom
compositions. In the present work we present a proteomic study of two snake venoms of the …

[HTML][HTML] Insight into the binding and hydrolytic preferences of hNudt16 based on nucleotide diphosphate substrates

M Chrabąszczewska, M Winiewska-Szajewska… - International Journal of …, 2021 - mdpi.com
Nudt16 is a member of the NUDIX family of hydrolases that show specificity towards
substrates consisting of a nucleoside diphosphate linked to another moiety X. Several …