Structure, function and evolution of CpG island promoters

F Antequera - Cellular and Molecular Life Sciences CMLS, 2003 - Springer
Mammalian promoters belong to two different categories in terms of base composition and
DNA methylation. In humans and mice, approximately 60% of all promoters colocalize with …

Making sense of eukaryotic DNA replication origins

DM Gilbert - Science, 2001 - science.org
DNA replication is the process by which cells make one complete copy of their genetic
information before cell division. In bacteria, readily identifiable DNA sequences constitute …

Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication

E Shinbrot, EE Henninger, N Weinhold… - Genome …, 2014 - genome.cshlp.org
Tumors with somatic mutations in the proofreading exonuclease domain of DNA polymerase
epsilon (POLE-exo*) exhibit a novel mutator phenotype, with markedly elevated TCT→ TAT …

Non-transcriptional control of DNA replication by c-Myc

D Dominguez-Sola, CY Ying, C Grandori, L Ruggiero… - Nature, 2007 - nature.com
The c-Myc proto-oncogene encodes a transcription factor that is essential for cell growth and
proliferation and is broadly implicated in tumorigenesis. However, the biological functions …

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

C Cayrou, P Coulombe, A Vigneron… - Genome …, 2011 - genome.cshlp.org
In metazoans, thousands of DNA replication origins (Oris) are activated at each cell cycle.
Their genomic organization and their genetic nature remain elusive. Here, we characterized …

The chromatin environment shapes DNA replication origin organization and defines origin classes

C Cayrou, B Ballester, I Peiffer, R Fenouil… - Genome …, 2015 - genome.cshlp.org
To unveil the still-elusive nature of metazoan replication origins, we identified them genome-
wide and at unprecedented high-resolution in mouse ES cells. This allowed initiation sites …

[HTML][HTML] Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing

M Anglana, F Apiou, A Bensimon, M Debatisse - Cell, 2003 - cell.com
Selection of active origins and regulation of interorigin spacing are poorly understood in
mammalian cells. Using tricolor analysis of combed DNA molecules, we studied an …

Sequence-independent DNA binding and replication initiation by the human origin recognition complex

S Vashee, C Cvetic, W Lu, P Simancek… - Genes & …, 2003 - genesdev.cshlp.org
We report that a highly purified human origin recognition complex (HsORC) has intrinsic
DNA-binding activity, and that this activity is modestly stimulated by ATP. HsORC binds …

Coordination of replication and transcription along a Drosophila chromosome

DM MacAlpine, HK Rodríguez, SP Bell - Genes & development, 2004 - genesdev.cshlp.org
The mechanisms by which metazoan origins of DNA replication are defined, regulated, and
influenced by chromosomal events remain poorly understood. To gain insights into these …

Loss of Geminin induces rereplication in the presence of functional p53

M Melixetian, A Ballabeni, L Masiero… - The Journal of cell …, 2004 - rupress.org
Strict regulation of DNA replication is essential to ensure proper duplication and segregation
of chromosomes during the cell cycle, as its deregulation can lead to genomic instability and …