A review of heuristics and metaheuristics for community detection in complex networks: Current usage, emerging development and future directions

AA Bara'a, AD Abbood, AA Hasan, C Pizzuti… - Swarm and Evolutionary …, 2021 - Elsevier
Sensibly highlighting the hidden structures of many real-world networks has attracted
growing interest and triggered a vast array of techniques on what is called nowadays …

Community detection in protein-protein interaction networks and applications

I Manipur, M Giordano, M Piccirillo… - IEEE/ACM …, 2021 - ieeexplore.ieee.org
The ability to identify and characterize not only the protein-protein interactions but also their
internal modular organization through network analysis is fundamental for understanding …

Nature-inspired optimization algorithms for community detection in complex networks: a review and future trends

DA Abduljabbar, SZM Hashim… - Telecommunication …, 2020 - Springer
Over the past couple of decades, the research area of network community detection has
seen substantial growth in popularity, leading to a wide range of researches in the literature …

A new evolutionary algorithm with locally assisted heuristic for complex detection in protein interaction networks

AH Abdulateef, AA Bara'a, AN Rashid, M Al-Ani - Applied Soft Computing, 2018 - Elsevier
The detection of protein complexes is an essential NP-hard problem in protein-protein
interaction networks (PPI). Modularity, community score, ratio cut, and internal density are …

An enhanced evolutionary algorithm for detecting complexes in protein interaction networks with heuristic biological operator

DA Abduljabbar, SZM Hashim… - Recent Advances on Soft …, 2020 - Springer
Detecting complexes in protein interaction networks is one of the most important topics of
current computational biology research due to its prominent role in predicting functions of yet …

An evolutionary algorithm with heuristic operator for detecting protein complexes in protein interaction networks with negative controls

MN Abbas, AA Bara'a, D Broneske, G Saake - IEEE Access, 2024 - ieeexplore.ieee.org
Computational biology research faces a formidable challenge in the detection of complexes
within protein-protein interaction (PPI) networks, critical for unraveling cellular processes …

Pearson coefficient matrix for studying the correlation of community detection scores in multi-objective evolutionary algorithm

AD Abbood, AA Hasan, AA Bara'a - Periodicals of Engineering and …, 2021 - pen.ius.edu.ba
Assessing a community detection algorithm is a difficult task due to the absence of finding a
standard definition for objective functions to accurately identify the structure of communities …

A new evolutionary multi-objective community mining algorithm for signed networks

AA Bara'a, HM Rada, MN Abbas, S Özdemir - Applied Soft Computing, 2019 - Elsevier
Community detection in presence of both positive and negative interactions in signed
community structures has recently enjoyed a large increase in interest. The general …

An enhanced multi-objective evolutionary algorithm with decomposition for signed community detection problem

MM Abdulrahman, AD Abood… - 2020 2nd Annual …, 2020 - ieeexplore.ieee.org
Community detection is useful for better understanding of the structure of complex networks,
and aids in the extraction of required information from such networks. Community detection …

Evolutionary algorithms for applications of biological networks: A review

G Liu, Q Liu, L Ma, Z Shao - … , ICIC 2021, Shenzhen, China, August 12–15 …, 2021 - Springer
With the rapid development of next-generation sequencing and high-throughput
technologies, much biological data have been generated. The analysis of biological …