Structure, mechanism, and evolution of the mRNA capping apparatus

S Shuman - 2000 - Elsevier
Publisher Summary This chapter discusses the recent progress, concerning the mechanism
of cap synthesis, by fungal and mammalian enzymes. Viral capping enzymes are discussed …

DNA ligases: structure, reaction mechanism, and function

AE Tomkinson, S Vijayakumar, JM Pascal… - Chemical …, 2006 - ACS Publications
The joining of interruptions in the phosphodiester backbone of duplex DNA is critical for
maintaining genomic integrity. DNA strand-breaks are produced as a consequence of …

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

JL Kim, KA Morgenstern, JP Griffith, MD Dwyer… - Structure, 1998 - cell.com
Abstract Background: Hepatitis C virus (HCV) represents a major health concern as it is
responsible for a significant number of hepatitis cases worldwide. Much research has …

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

L Aravind, EV Koonin - Journal of molecular biology, 1999 - Elsevier
Using a number of diverse protein families as test cases, we investigate the ability of the
recently developed iterative sequence database search method, PSI-BLAST, to identify …

The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid–binding fold

M Bycroft, TJP Hubbard, M Proctor, SMV Freund… - Cell, 1997 - cell.com
The S1 domain, originally identified in ribosomal protein S1, is found in a large number of
RNA-associated proteins. The structure of the S1 RNA-binding domain from the E. coli …

[HTML][HTML] From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair

I Callebaut, JP Mornon - FEBS letters, 1997 - Elsevier
Inherited mutations in BRCA1 predispose to breast and ovarian cancer, but the biological
function of the BRCA1 protein has remained largely elusive. The recent correspondence of …

Human DNA ligase I completely encircles and partially unwinds nicked DNA

JM Pascal, PJ O'Brien, AE Tomkinson, T Ellenberger - Nature, 2004 - nature.com
The end-joining reaction catalysed by DNA ligases is required by all organisms and serves
as the ultimate step of DNA replication, repair and recombination processes. One of three …

[HTML][HTML] Identification of a defect in DNA ligase IV in a radiosensitive leukaemia patient

E Riballo, SE Critchlow, SH Teo, AJ Doherty… - Current biology, 1999 - cell.com
The major mechanism for the repair of DNA double-strand breaks (DSBs) in mammalian
cells is non-homologous end-joining (NHEJ), a process that involves the DNA-dependent …

Depth-stratified functional and taxonomic niche specialization in the 'core'and 'flexible'Pacific Ocean Virome

BL Hurwitz, JR Brum, MB Sullivan - The ISME Journal, 2015 - academic.oup.com
Microbes drive myriad ecosystem processes, and their viruses modulate microbial-driven
processes through mortality, horizontal gene transfer, and metabolic reprogramming by viral …

Base flipping

RJ Roberts, X Cheng - Annual review of biochemistry, 1998 - annualreviews.org
Base flipping is the phenomenon whereby a base in normal B-DNA is swung completely out
of the helix into an extrahelical position. It was discovered in 1994 when the first co-crystal …