Mining microsatellites in eukaryotic genomes

PC Sharma, A Grover, G Kahl - Trends in biotechnology, 2007 - cell.com
During recent decades, microsatellites have become the most popular source of genetic
markers. More recently, the availability of enormous sequence data for a large number of …

The molecular ecologist's guide to expressed sequence tags

AMY Bouck, T Vision - Molecular ecology, 2007 - Wiley Online Library
Genomics and bioinformatics have great potential to help address numerous topics in
ecology and evolution. Expressed sequence tags (ESTs) can bridge genomics and …

Genome analysis of the platypus reveals unique signatures of evolution

Nature, 2008 - nature.com
We present a draft genome sequence of the platypus, Ornithorhynchus anatinus. This
monotreme exhibits a fascinating combination of reptilian and mammalian characters. For …

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

W Wei, X Qi, L Wang, Y Zhang, W Hua, D Li, H Lv… - BMC genomics, 2011 - Springer
Background Sesame is an important oil crop, but limited transcriptomic and genomic data
are currently available. This information is essential to clarify the fatty acid and lignan …

SciRoKo: a new tool for whole genome microsatellite search and investigation

R Kofler, C Schlötterer, T Lelley - Bioinformatics, 2007 - academic.oup.com
SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic
sequences. The combination of an extremely fast search algorithm with a built-in summary …

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

S Dutta, G Kumawat, BP Singh, DK Gupta, S Singh… - BMC plant biology, 2011 - Springer
Abstract Background Pigeonpea [Cajanus cajan (L.) Millspaugh], one of the most important
food legumes of semi-arid tropical and subtropical regions, has limited genomic resources …

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development

R Garg, RK Patel, S Jhanwar, P Priya… - Plant …, 2011 - academic.oup.com
Chickpea (Cicer arietinum) is an important food legume crop but lags in the availability of
genomic resources. In this study, we have generated about 2 million high-quality sequences …

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

L Barchi, S Lanteri, E Portis, A Acquadro, G Valè… - BMC genomics, 2011 - Springer
Abstract Background The eggplant (Solanum melongena L.) genome is relatively
unexplored, especially compared to those of the other major Solanaceae crops tomato and …

SSR locator: tool for simple sequence repeat discovery integrated with primer design and PCR simulation

LC Maia, DA Palmieri, VQ Souza… - … journal of plant …, 2008 - Wiley Online Library
Microsatellites or SSRs (simple sequence repeats) are ubiquitous short tandem duplications
occurring in eukaryotic organisms. These sequences are among the best marker …

Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping

FL Luro, G Costantino, J Terol, X Argout, T Allario… - BMC genomics, 2008 - Springer
Background During the last decade, numerous microsatellite markers were developed for
genotyping and to identify closely related plant genotypes. In citrus, previously developed …