[HTML][HTML] The ONIOM method and its applications

LW Chung, WMC Sameera, R Ramozzi… - Chemical …, 2015 - ACS Publications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …

High-frequency and-field electron paramagnetic resonance of transition metal ion (d block) coordination complexes

J Telser, A Ozarowski, J Krzystek - Electron Paramagnetic …, 2012 - books.google.com
High-frequency and-field electron paramagnetic resonance (HFEPR), in its current
configuration (frequencies up to 1THz; fields up to 35T), has been applied to transition metal …

Hydrogen Bonding and Spin Density Distribution in the QB Semiquinone of Bacterial Reaction Centers and Comparison with the QA Site

E Martin, RI Samoilova, KV Narasimhulu… - Journal of the …, 2011 - ACS Publications
In the photosynthetic reaction center from Rhodobacter sphaeroides, the primary (QA) and
secondary (QB) electron acceptors are both ubiquinone-10, but with very different properties …

Calculated vibrational properties of pigments in protein binding sites

HP Lamichhane, G Hastings - Proceedings of the National …, 2011 - National Acad Sciences
FTIR difference spectroscopy is widely used to probe molecular bonding interactions of
protein-bound electron transfer cofactors. The technique is particularly attractive because it …

The nature of tryptophan radicals involved in the long‐range electron transfer of lignin peroxidase and lignin peroxidase‐like systems: Insights from quantum …

C Bernini, R Pogni, R Basosi… - … : Structure, Function, and …, 2012 - Wiley Online Library
A catalytically active tryptophan radical has been demonstrated to be involved in the long‐
range electron transfer to the heme cofactor of lignin peroxidase (LiP) from Phanerochaete …

Structure and function of quinones in biological solar energy transduction: A differential pulse voltammetry, EPR, and hyperfine sublevel correlation (HYSCORE) …

AM Weyers, R Chatterjee, S Milikisiyants… - The Journal of …, 2009 - ACS Publications
Quinones are widely used electron transport cofactors in photosynthetic reaction centers.
Previous studies have suggested that the structure of the quinone cofactors and the protein …

The Semiquinone at the Qi Site of the bc 1 Complex Explored Using HYSCORE Spectroscopy and Specific Isotopic Labeling of Ubiquinone in Rhodobacter …

S Hong, WB De Almeida, AT Taguchi, RI Samoilova… - Biochemistry, 2014 - ACS Publications
Specific isotopic labeling at the residue or substituent level extends the scope of different
spectroscopic approaches to the atomistic level. Here we describe 13C isotopic labeling of …

Resolving protein-semiquinone interactions by two-dimensional ESEEM spectroscopy

SA Dikanov - Electron Paramagnetic Resonance, 2012 - books.google.com
Quinones or coenzyme Q are central components of most respiratory and photosynthetic
electron transfer chains. They play a unique role in membrane enzymology, acting not only …

Conformational Differences between the Methoxy Groups of QA and QB Site Ubisemiquinones in Bacterial Reaction Centers: A Key Role for Methoxy Group …

AT Taguchi, PJ O'Malley, CA Wraight, SA Dikanov - Biochemistry, 2013 - ACS Publications
Ubiquinone is an almost universal, membrane-associated redox mediator. Its ability to
accept either one or two electrons allows it to function in critical roles in biological electron …

Comparison of calculated and experimental isotope edited FTIR difference spectra for purple bacterial photosynthetic reaction centers with different quinones …

N Zhao, HP Lamichhane, G Hastings - Frontiers in Plant Science, 2013 - frontiersin.org
Previously we have shown that ONIOM type (QM/MM) calculations can be used to simulate
isotope edited FTIR difference spectra for neutral ubiquinone in the QA binding site in …