Next generation sequencing and bioinformatics methodologies for infectious disease research and public health: approaches, applications, and considerations for …

I Maljkovic Berry, MC Melendrez… - The Journal of …, 2020 - academic.oup.com
Next generation sequencing (NGS) combined with bioinformatics has successfully been
used in a vast array of analyses for infectious disease research of public health relevance …

Emerging pathogens in the fish farming industry and sequencing-based pathogen discovery

T Tengs, E Rimstad - Developmental & Comparative Immunology, 2017 - Elsevier
The use of large scale DNA/RNA sequencing has become an integral part of biomedical
research. Reduced sequencing costs and the availability of efficient computational …

Metagenomic analysis reveals Culex mosquito virome diversity and Japanese encephalitis genotype V in the Republic of Korea

MA Sanborn, KMG Wuertz, HC Kim, Y Yang… - Molecular …, 2021 - Wiley Online Library
Recent outbreaks of emerging and re‐emerging viruses have shown that timely detection of
novel arboviruses with epidemic potential is essential to mitigate human health risks. There …

Metagenomic Analysis Reveals Three Novel and Prevalent Mosquito Viruses from a Single Pool of Aedes vexans nipponii Collected in the Republic of Korea

MA Sanborn, TA Klein, HC Kim, CK Fung, KL Figueroa… - Viruses, 2019 - mdpi.com
Arboviruses continue to be a significant global health concern. The unbiased metagenomic
analyses of mosquito-borne and mosquito-specific viruses are useful to understand viral …

[HTML][HTML] Human adenovirus type 55 distribution, regional persistence, and genetic variability

J Hang, AE Kajon, PCF Graf, IM Berry… - Emerging Infectious …, 2020 - ncbi.nlm.nih.gov
Abstract Human adenovirus type 55 (HAdV-55) causes acute respiratory disease of variable
severity and has become an emergent threat in both civilian and military populations. HAdV …

Metagenomics for clinical infectious disease diagnostics steps closer to reality

JP Dekker - Journal of clinical microbiology, 2018 - Am Soc Microbiol
Metagenomics approaches based on shotgun next-generation sequencing hold promise for
infectious disease diagnostics. Despite substantial challenges that remain, work done over …

Metagenomics analysis reveals presence of the Merida-like virus in Georgia

JM Potter-Birriel, AR Pollio, BD Knott… - Frontiers in …, 2023 - frontiersin.org
Arbovirus surveillance is fundamental for the discovery of novel viruses and prevention of
febrile vector-borne illnesses. Vector-borne pathogens can rapidly expand and adapt in new …

[HTML][HTML] Use of unamplified RNA/cDNA–hybrid nanopore sequencing for rapid detection and characterization of RNA viruses

A Kilianski, PA Roth, AT Liem, JM Hill… - Emerging infectious …, 2016 - ncbi.nlm.nih.gov
Nanopore sequencing, a novel genomics technology, has potential applications for routine
biosurveillance, clinical diagnosis, and outbreak investigation of virus infections. Using rapid …

Discovery of Rickettsia spp. in mosquitoes collected in Georgia by metagenomics analysis and molecular characterization

AR Pollio, J Jiang, SS Lee, JS Gandhi… - Frontiers in …, 2022 - frontiersin.org
Arthropods have a broad and expanding worldwide presence and can transmit a variety of
viral, bacterial, and parasite pathogens. A number of Rickettsia and Orientia species …

Molecular characterization of novel mosquito-borne Rickettsia spp. from mosquitoes collected at the Demilitarized Zone of the Republic of Korea

AN Maina, TA Klein, HC Kim, ST Chong, YU Yang… - PloS one, 2017 - journals.plos.org
Rickettsiae are associated with a diverse range of invertebrate hosts. Of these, mosquitoes
could emerge as one of the most important vectors because of their ability to transmit …