Structure and function in the budding yeast nucleus

A Taddei, SM Gasser - Genetics, 2012 - academic.oup.com
Budding yeast, like other eukaryotes, carries its genetic information on chromosomes that
are sequestered from other cellular constituents by a double membrane, which forms the …

Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes

CSK Lee, M Weiβ, S Hamperl - Nucleus, 2023 - Taylor & Francis
In eukaryotic genomes, hundreds to thousands of potential start sites of DNA replication
named origins are dispersed across each of the linear chromosomes. During S-phase, only …

Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity

A Dave, C Cooley, M Garg, A Bianchi - Cell reports, 2014 - cell.com
The firing of eukaryotic origins of DNA replication requires CDK and DDK kinase activities.
DDK, in particular, is involved in setting the temporal program of origin activation, a …

Origin firing regulations to control genome replication timing

D Boos, P Ferreira - Genes, 2019 - mdpi.com
Complete genome duplication is essential for genetic homeostasis over successive cell
generations. Higher eukaryotes possess a complex genome replication program that …

Replicating large genomes: divide and conquer

JC Rivera-Mulia, DM Gilbert - Molecular cell, 2016 - cell.com
Complete duplication of large metazoan chromosomes requires thousands of potential
initiation sites, only a small fraction of which are selected in each cell cycle. Assembly of the …

Rif1-dependent control of replication timing

L Richards, S Das, JT Nordman - Genes, 2022 - mdpi.com
Successful duplication of the genome requires the accurate replication of billions of base
pairs of DNA within a relatively short time frame. Failure to accurately replicate the genome …

Location, location, location: it's all in the timing for replication origins

OM Aparicio - Genes & development, 2013 - genesdev.cshlp.org
The differential replication timing of eukaryotic replication origins has long been linked with
epigenetic regulation of gene expression and more recently with genome stability and …

Replication timing regulation of eukaryotic replicons: Rif1 as a global regulator of replication timing

S Yamazaki, M Hayano, H Masai - Trends in Genetics, 2013 - cell.com
Origins of DNA replication on eukaryotic genomes have been observed to fire during S
phase in a coordinated manner. Studies in yeast indicate that origin firing is affected by …

Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing

H Miura, S Takahashi, T Shibata, K Nagao, C Obuse… - Nature …, 2020 - nature.com
Replication timing (RT) domains are stable units of chromosome structure that are regulated
in the context of development and disease. Conventional genome-wide RT mapping …

Chromatin structure and replication origins: determinants of chromosome replication and nuclear organization

OK Smith, MI Aladjem - Journal of Molecular Biology, 2014 - Elsevier
The DNA replication program is, in part, determined by the epigenetic landscape that
governs local chromosome architecture and directs chromosome duplication. Replication …