Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identification, disease prediction and treatment

LJ Marcos-Zambrano… - Frontiers in …, 2021 - frontiersin.org
The number of microbiome-related studies has notably increased the availability of data on
human microbiome composition and function. These studies provide the essential material …

Deep learning and its application in geochemical mapping

R Zuo, Y Xiong, J Wang, EJM Carranza - Earth-science reviews, 2019 - Elsevier
Abstract Machine learning algorithms have been applied widely in the fields of natural
science, social science and engineering. It can be expected that machine learning …

Effects of COVID-19 era on a subtropical river basin in Bangladesh: Heavy metal (loid) s distribution, sources and probable human health risks

MAB Siddique, MS Islam, MM Ali, C Tokatli… - Science of the Total …, 2023 - Elsevier
The COVID-19 era has profoundly affected everyday human life, the environment, and
freshwater ecosystems worldwide. Despite the numerous influences, a strict COVID-19 …

Compositional data analysis of microbiome and any-omics datasets: a validation of the additive logratio transformation

M Greenacre, M Martínez-Álvaro, A Blasco - Frontiers in microbiology, 2021 - frontiersin.org
Microbiome and omics datasets are, by their intrinsic biological nature, of high
dimensionality, characterized by counts of large numbers of components (microbial genes …

[图书][B] Chemometrics with R

R Wehrens - 2011 - Springer
In the last twenty years, the life sciences have seen a dramatic increase in the size and
number of data sets. Simple sensing devices in many cases offer real-time data streaming …

[HTML][HTML] Comparison of zero replacement strategies for compositional data with large numbers of zeros

S Lubbe, P Filzmoser, M Templ - Chemometrics and Intelligent Laboratory …, 2021 - Elsevier
Modern applications in chemometrics and bioinformatics result in compositional data sets
with a high proportion of zeros. An example are microbiome data, where zeros refer to …

Compositional data analysis

M Greenacre - Annual Review of Statistics and its Application, 2021 - annualreviews.org
Compositional data are nonnegative data carrying relative, rather than absolute, information—
these are often data with a constant-sum constraint on the sample values, for example …

Compositional data: the sample space and its structure

JJ Egozcue, V Pawlowsky-Glahn - Test, 2019 - Springer
The log-ratio approach to compositional data (CoDa) analysis has now entered a mature
phase. The principles and statistical tools introduced by J. Aitchison in the eighties have …

Overview of data preprocessing for machine learning applications in human microbiome research

E Ibrahimi, MB Lopes, X Dhamo, A Simeon… - Frontiers in …, 2023 - frontiersin.org
Although metagenomic sequencing is now the preferred technique to study microbiome-host
interactions, analyzing and interpreting microbiome sequencing data presents challenges …

The role of microbial ecology in improving the performance of anaerobic digestion of sewage sludge

C Krohn, L Khudur, DA Dias, B Van den Akker… - Frontiers in …, 2022 - frontiersin.org
The use of next-generation diagnostic tools to optimise the anaerobic digestion of municipal
sewage sludge has the potential to increase renewable natural gas recovery, improve the …