Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Chemical named entities recognition: a review on approaches and applications

S Eltyeb, N Salim - Journal of cheminformatics, 2014 - Springer
The rapid increase in the flow rate of published digital information in all disciplines has
resulted in a pressing need for techniques that can simplify the use of this information. The …

ChemSpot: a hybrid system for chemical named entity recognition

T Rocktäschel, M Weidlich, U Leser - Bioinformatics, 2012 - academic.oup.com
Motivation: The accurate identification of chemicals in text is important for many applications,
including computer-assisted reconstruction of metabolic networks or retrieval of information …

A dictionary to identify small molecules and drugs in free text

KM Hettne, RH Stierum, MJ Schuemie… - …, 2009 - academic.oup.com
Motivation: From the scientific community, a lot of effort has been spent on the correct
identification of gene and protein names in text, while less effort has been spent on the …

[HTML][HTML] Using a shallow linguistic kernel for drug–drug interaction extraction

I Segura-Bedmar, P Martinez… - Journal of biomedical …, 2011 - Elsevier
A drug–drug interaction (DDI) occurs when one drug influences the level or activity of
another drug. Information Extraction (IE) techniques can provide health care professionals …

[PDF][PDF] UTurku: drug named entity recognition and drug-drug interaction extraction using SVM classification and domain knowledge

J Björne, S Kaewphan, T Salakoski - Second Joint Conference on …, 2013 - aclanthology.org
The DDIExtraction 2013 task in the SemEval conference concerns the detection of drug
names and statements of drug-drug interactions (DDI) from text. Extraction of DDIs is …

Auto-labelling entities in low-resource text: a geological case study

M Enkhsaikhan, W Liu, EJ Holden… - Knowledge and Information …, 2021 - Springer
Studies on named entity recognition (NER) often require a substantial amount of human-
annotated training data. This makes technical domain-specific NER from industry data …

Effects of Semantic Features on Machine Learning-Based Drug Name Recognition Systems: Word Embeddings vs. Manually Constructed Dictionaries

S Liu, B Tang, Q Chen, X Wang - Information, 2015 - mdpi.com
Semantic features are very important for machine learning-based drug name recognition
(DNR) systems. The semantic features used in most DNR systems are based on drug …

A linguistic rule-based approach to extract drug-drug interactions from pharmacological documents

I Segura-Bedmar, P Martínez, C de Pablo-Sánchez - BMC bioinformatics, 2011 - Springer
Background A drug-drug interaction (DDI) occurs when one drug influences the level or
activity of another drug. The increasing volume of the scientific literature overwhelms health …

Text mining for drugs and chemical compounds: methods, tools and applications

M Vazquez, M Krallinger, F Leitner… - Molecular …, 2011 - Wiley Online Library
Providing prior knowledge about biological properties of chemicals, such as kinetic values,
protein targets, or toxic effects, can facilitate many aspects of drug development. Chemical …