[HTML][HTML] Epigenetic processes in plant stress priming: Open questions and new approaches

CJ Harris, A Amtmann, J Ton - Current Opinion in Plant Biology, 2023 - Elsevier
Priming reflects the capacity of plants to memorise environmental stress experience and
improve their response to recurring stress. Epigenetic modifications in DNA and associated …

Root cell types as an interface for biotic interactions

D Kawa, SM Brady - Trends in Plant Science, 2022 - cell.com
Root responses to environmental stresses show a high level of cell type and developmental
stage specificity. Interactions with beneficial and pathogenic organisms–including microbes …

Synthetic genetic circuits as a means of reprogramming plant roots

JAN Brophy, KJ Magallon, L Duan, V Zhong… - Science, 2022 - science.org
The shape of a plant's root system influences its ability to reach essential nutrients in the soil
and to acquire water during drought. Progress in engineering plant roots to optimize water …

Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap

T Nobori, M Oliva, R Lister, JR Ecker - Nature Plants, 2023 - nature.com
Retrieving the complex responses of individual cells in the native three-dimensional tissue
context is crucial for a complete understanding of tissue functions. Here, we present …

Plant synthetic biology innovations for biofuels and bioproducts

Y Yang, TA Chaffin, AH Ahkami, E Blumwald… - Trends in …, 2022 - cell.com
Plant-based biosynthesis of fuels, chemicals, and materials promotes environmental
sustainability, which includes decreases in greenhouse gas emissions, water pollution, and …

Effector identification in plant pathogens

AH Lovelace, S Dorhmi, MT Hulin, Y Li… - …, 2023 - Am Phytopath Society
Effectors play a central role in determining the outcome of plant− pathogen interactions. As
key virulence proteins, effectors are collectively indispensable for disease development. By …

Interpreting omics data with pathway enrichment analysis

K Zhao, SY Rhee - Trends in Genetics, 2023 - cell.com
Pathway enrichment analysis is indispensable for interpreting omics datasets and
generating hypotheses. However, the foundations of enrichment analysis remain elusive to …

[HTML][HTML] Analysis of meristems and plant regeneration at single-cell resolution

RY Liao, JW Wang - Current opinion in plant biology, 2023 - Elsevier
Rapid development of high-throughput single-cell RNA sequencing (scRNA-seq)
technologies offers exciting opportunities to reveal new and rare cell types, previously …

Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

AE Yaschenko, M Fenech, S Mazzoni-Putman… - Current opinion in plant …, 2022 - Elsevier
Gene expression differences between distinct cell types are orchestrated by specific sets of
transcription factors and epigenetic regulators acting upon the genome. In plants, the …

[HTML][HTML] A comparative analysis of single-cell transcriptomic technologies in plants and animals

VR Netla, H Shinde, G Kumar, A Dudhate, JC Hong… - Current Plant …, 2023 - Elsevier
The development of sequencing methods has resulted in the investigation of many
unexplored research areas. Among the different sequencing methods, single-cell …