A simple algorithm for identifying abbreviation definitions in biomedical text

AS Schwartz, MA Hearst - Biocomputing 2003, 2002 - World Scientific
The volume of biomedical text is growing at a fast rate, creating challenges for humans and
computer systems alike. One of these challenges arises from the frequent use of novel …

An architecture for biological information extraction and representation

A Vailaya, P Bluvas, R Kincaid, A Kuchinsky… - Proceedings of the …, 2004 - dl.acm.org
Technological advances in biomedical research are generating a plethora of heterogeneous
data at a high rate. There is a critical need for extraction, integration and management tools …

[HTML][HTML] @ Note: a workbench for biomedical text mining

A Lourenço, R Carreira, S Carneiro, P Maia… - Journal of biomedical …, 2009 - Elsevier
Biomedical Text Mining (BioTM) is providing valuable approaches to the automated curation
of scientific literature. However, most efforts have addressed the benchmarking of new …

[PDF][PDF] A new text mining approach for finding protein-to-disease associations

H Al-Mubaid, RK Singh - American Journal of Biochemistry and …, 2005 - Citeseer
Discovering significant relationships between biological entities from text documents is an
important task for biologists in order to develop biological models for research and …

Identifying synonymous concepts in preparation for technology mining

C Courseault Trumbach… - Journal of Information …, 2007 - journals.sagepub.com
In this research, the development of aconcept-clumping algorithm'designed to improve the
clustering of technical concepts is demonstrated. The algorithm developed first identifies a …

A probabilistic model for identifying protein names and their name boundaries

K Seki, J Mostafa - … . CSB2003. Proceedings of the 2003 IEEE …, 2003 - ieeexplore.ieee.org
This paper proposes a method for identifying protein names in biomedical texts with an
emphasis on detecting protein name boundaries. We use a probabilistic model which …

A text-mining technique for extracting gene-disease associations from the biomedical literature

H Al-Mubaid, RK Singh - International journal of …, 2010 - inderscienceonline.com
We propose a new text mining technique to identify associations between biological entities,
specifically genes-diseases associations, from the biomedical literature. The proposed …

A hybrid approach to protein name identification in biomedical texts

K Seki, J Mostafa - Information Processing & Management, 2005 - Elsevier
This paper presents a hybrid approach to identifying protein names in biomedical texts,
which is regarded as a crucial step for text mining. Our approach employs a set of simple …

Using concept-based indexing to improve language modeling approach to genomic IR

X Zhou, X Zhang, X Hu - European Conference on Information Retrieval, 2006 - Springer
Genomic IR, characterized by its highly specific information need, severe synonym and
polysemy problem, long term name and rapid growing literature size, is challenging IR …

On the use of natural language processing for automated conceptual data modeling

S Du - 2008 - search.proquest.com
This research involved the development of a natural language processing (NLP)
architecture for the extraction of entity relation diagrams (ERDs) from natural language …