Genome diversity and evolution in the budding yeasts (Saccharomycotina)

BA Dujon, EJ Louis - Genetics, 2017 - academic.oup.com
Considerable progress in our understanding of yeast genomes and their evolution has been
made over the last decade with the sequencing, analysis, and comparisons of numerous …

Meta-omics insights in the microbial community profiling and functional characterization of fermented foods

G Chen, C Chen, Z Lei - Trends in Food Science & Technology, 2017 - Elsevier
Background Food fermentation is an important pillar of societal traditions, but also crucial in
terms of economy for numerous regional products, as well as rich microbiological resources …

Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease

H Chu, A Khosravi, IP Kusumawardhani, AHK Kwon… - Science, 2016 - science.org
Inflammatory bowel disease (IBD) is associated with risk variants in the human genome and
dysbiosis of the gut microbiome, though unifying principles for these findings remain largely …

Pan-genome analyses of model fungal species

CGP McCarthy, DA Fitzpatrick - Microbial genomics, 2019 - microbiologyresearch.org
The concept of the species 'pan-genome', the union of 'core'conserved genes and all
'accessory'non-conserved genes across all strains of a species, was first proposed in …

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

SR Engel, ED Wong, RS Nash, S Aleksander… - Genetics, 2022 - academic.oup.com
Saccharomyces cerevisiae is used to provide fundamental understanding of eukaryotic
genetics, gene product function, and cellular biological processes. Saccharomyces Genome …

CRISPR-directed mitotic recombination enables genetic mapping without crosses

MJ Sadhu, JS Bloom, L Day, L Kruglyak - Science, 2016 - science.org
Linkage and association studies have mapped thousands of genomic regions that contribute
to phenotypic variation, but narrowing these regions to the underlying causal genes and …

Concepts of the last eukaryotic common ancestor

MA O'Malley, MM Leger, JG Wideman… - Nature ecology & …, 2019 - nature.com
Insight into the last eukaryotic common ancestor (LECA) is central to any phylogeny-based
reconstruction of early eukaryotic evolution. Increasing amounts of data enable such …

Design of an improved universal signal peptide based on the α-factor mating secretion signal for enzyme production in yeast

P Aza, G Molpeceres, F de Salas… - Cellular and Molecular Life …, 2021 - Springer
Saccharomyces cerevisiae plays an important role in the heterologous expression of an
array of proteins due to its easy manipulation, low requirements and ability for protein post …

KinFin: software for taxon-aware analysis of clustered protein sequences

DR Laetsch, ML Blaxter - G3: Genes, Genomes, Genetics, 2017 - academic.oup.com
The field of comparative genomics is concerned with the study of similarities and differences
between the information encoded in the genomes of organisms. A common approach is to …

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

SJ McIlwain, D Peris, M Sardi… - G3: Genes …, 2016 - academic.oup.com
The genome sequences of more than 100 strains of the yeast Saccharomyces cerevisiae
have been published. Unfortunately, most of these genome assemblies contain dozens to …