Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

R Akbar, H Bashour, P Rawat, PA Robert, E Smorodina… - MAbs, 2022 - Taylor & Francis
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …

Advancement in COVID‐19 detection using nanomaterial‐based biosensors

PL Truong, Y Yin, D Lee, SH Ko - Exploration, 2023 - Wiley Online Library
Abstract Coronavirus disease 2019 (COVID‐19) pandemic has exemplified how viral growth
and transmission are a significant threat to global biosecurity. The early detection and …

An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants

JD Guest, T Vreven, J Zhou, I Moal, JR Jeliazkov… - Structure, 2021 - cell.com
Accurate predictive modeling of antibody-antigen complex structures and structure-based
antibody design remain major challenges in computational biology, with implications for …

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics

SK Dhanda, SS Usmani, P Agrawal… - Briefings in …, 2017 - academic.oup.com
The conventional approach for designing vaccine against a particular disease involves
stimulation of the immune system using the whole pathogen responsible for the disease. In …

Secondary structure and conformational stability of the antigen residues making contact with antibodies

X Qiao, L Qu, Y Guo, T Hoshino - The Journal of Physical …, 2021 - ACS Publications
Antibodies are crucial biomolecules that bring high therapeutic efficacy in medicine and
accurate molecular detection in diagnosis. Many studies have been devoted to analyzing …

Analysis of binding modes of antigen–antibody complexes by molecular mechanics calculation

L Qu, X Qiao, F Qi, N Nishida… - Journal of Chemical …, 2021 - ACS Publications
Antibodies are one of the most important protein molecules in biopharmaceutics. Due to the
recent advance in technology for producing monoclonal antibodies, many structural data are …

Vaccine design and development: exploring the interface with computational biology and AI

Ananya, DC Panchariya, A Karthic… - International Reviews …, 2024 - Taylor & Francis
Computational biology involves applying computer science and informatics techniques in
biology to understand complex biological data. It allows us to collect, connect, and analyze …

AllerBase: a comprehensive allergen knowledgebase

K Kadam, R Karbhal, VK Jayaraman, S Sawant… - Database, 2017 - academic.oup.com
Allergic diseases represent a major health concern worldwide due to steady rise in their
prevalence leading to increased disease burden. The field of allergy research has …

Immunoinformatics and epitope prediction

J Ramana, K Mehla - Immunoinformatics, 2020 - Springer
With advancements in sequencing technologies, vast amount of experimental data has
accumulated. Due to rapid progress in the development of bioinformatics tools and the …

Understanding differences between synthetic and natural antibodies can help improve antibody engineering

A Burkovitz, Y Ofran - MAbs, 2016 - Taylor & Francis
abstract Synthetic libraries are a major source of human-like antibody (Ab) drug leads. To
assess the similarity between natural Abs and the products of these libraries, we compared …