Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology

H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

RH Nilsson, KH Larsson, AFS Taylor… - Nucleic acids …, 2019 - academic.oup.com
Abstract UNITE (https://unite. ut. ee/) is a web-based database and sequence management
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …

[图书][B] Joint species distribution modelling: With applications in R

O Ovaskainen, N Abrego - 2020 - books.google.com
Joint species distribution modelling (JSDM) is a fast-developing field and promises to
revolutionise how data on ecological communities are analysed and interpreted. Written for …

Assessment of BOLD and GenBank–Their accuracy and reliability for the identification of biological materials

KA Meiklejohn, N Damaso, JM Robertson - PloS one, 2019 - journals.plos.org
Taxonomic identification of biological materials can be achieved through DNA barcoding,
where an unknown “barcode” sequence is compared to a reference database. In many …

Delivery mechanism can enhance probiotic activity against honey bee pathogens

BA Daisley, AP Pitek, C Torres, R Lowery… - The ISME …, 2023 - academic.oup.com
Managed honey bee (Apis mellifera) populations play a crucial role in supporting pollination
of food crops but are facing unsustainable colony losses, largely due to rampant disease …

Fungal communities decline with urbanization—more in air than in soil

N Abrego, B Crosier, P Somervuo, N Ivanova… - The ISME …, 2020 - academic.oup.com
Increasing evidence suggests that degradation of biodiversity in human populated areas is a
threat for the ecosystem processes that are relevant for human well-being. Fungi are a …

Airborne DNA reveals predictable spatial and seasonal dynamics of fungi

N Abrego, B Furneaux, B Hardwick, P Somervuo… - Nature, 2024 - nature.com
Fungi are among the most diverse and ecologically important kingdoms in life. However, the
distributional ranges of fungi remain largely unknown as do the ecological mechanisms that …

High‐throughput identification and diagnostics of pathogens and pests: overview and practical recommendations

L Tedersoo, R Drenkhan, S Anslan… - Molecular ecology …, 2019 - Wiley Online Library
High‐throughput identification technologies provide efficient tools for understanding the
ecology and functioning of microorganisms. Yet, these methods have been only rarely used …