Coronavirus envelope protein: current knowledge

D Schoeman, BC Fielding - Virology journal, 2019 - Springer
Abstract Background Coronaviruses (CoVs) primarily cause enzootic infections in birds and
mammals but, in the last few decades, have shown to be capable of infecting humans as …

Is there a link between the pathogenic human coronavirus envelope protein and immunopathology? A review of the literature

D Schoeman, BC Fielding - Frontiers in microbiology, 2020 - frontiersin.org
Since the severe acute respiratory syndrome (SARS) outbreak in 2003, human
coronaviruses (hCoVs) have been identified as causative agents of severe acute respiratory …

The PDZ-binding motif of severe acute respiratory syndrome coronavirus envelope protein is a determinant of viral pathogenesis

JM Jimenez-Guardeño, JL Nieto-Torres… - PLoS …, 2014 - journals.plos.org
A recombinant severe acute respiratory syndrome coronavirus (SARS-CoV) lacking the
envelope (E) protein is attenuated in vivo. Here we report that E protein PDZ-binding motif …

Identification of the mechanisms causing reversion to virulence in an attenuated SARS-CoV for the design of a genetically stable vaccine

JM Jimenez-Guardeño, JA Regla-Nava… - PLoS …, 2015 - journals.plos.org
A SARS-CoV lacking the full-length E gene (SARS-CoV-∆ E) was attenuated and an
effective vaccine. Here, we show that this mutant virus regained fitness after serial passages …

Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning

ZN Gerek, SB Ozkan - PLoS computational biology, 2011 - journals.plos.org
The allosteric mechanism plays a key role in cellular functions of several PDZ domain
proteins (PDZs) and is directly linked to pharmaceutical applications; however, it is a …

Evolution of conformational dynamics determines the conversion of a promiscuous generalist into a specialist enzyme

T Zou, VA Risso, JA Gavira… - Molecular biology …, 2015 - academic.oup.com
β-lactamases are produced by many modern bacteria as a mechanism of resistance toward
β-lactam antibiotics, the most common antibiotics in use. β-lactamases, however, are ancient …

Principles of allosteric interactions in cell signaling

R Nussinov, CJ Tsai, J Liu - Journal of the American Chemical …, 2014 - ACS Publications
Linking cell signaling events to the fundamental physicochemical basis of the
conformational behavior of single molecules and ultimately to cellular function is a key …

[HTML][HTML] Plasticity of PDZ domains in ligand recognition and signaling

Y Ivarsson - FEBS letters, 2012 - Elsevier
The PDZ domain is a protein–protein interacting module that plays an important role in the
organization of signaling complexes. The recognition of short intrinsically disordered C …

Using azobenzene photocontrol to set proteins in motion

O Bozovic, B Jankovic, P Hamm - Nature Reviews Chemistry, 2022 - nature.com
Controlling the activity of proteins with azobenzene photoswitches is a potent tool for
manipulating their biological function. With the help of light, it is possible to change binding …

Manipulation of conformational change in proteins by single-residue perturbations

C Atilgan, ZN Gerek, SB Ozkan, AR Atilgan - Biophysical journal, 2010 - cell.com
Using the perturbation-response scanning (PRS) technique, we study a set of 25 proteins
that display a variety of conformational motions upon ligand binding (eg, shear, hinge …