[HTML][HTML] The impacts of climate change on fish growth: A summary of conducted studies and current knowledge
M Huang, L Ding, J Wang, C Ding, J Tao - Ecological Indicators, 2021 - Elsevier
Global climate change is increasingly and profoundly threatening fishes, resulting in an
uncertain future for both wild fish diversity and global fisheries. Understanding how fish …
uncertain future for both wild fish diversity and global fisheries. Understanding how fish …
Bioinformatics resources for SARS-CoV-2 discovery and surveillance
T Hu, J Li, H Zhou, C Li, EC Holmes… - Briefings in …, 2021 - academic.oup.com
In early January 2020, the novel coronavirus (SARS-CoV-2) responsible for a pneumonia
outbreak in Wuhan, China, was identified using next-generation sequencing (NGS) and …
outbreak in Wuhan, China, was identified using next-generation sequencing (NGS) and …
Independent infections of porcine deltacoronavirus among Haitian children
JA Lednicky, MS Tagliamonte, SK White, MA Elbadry… - Nature, 2021 - nature.com
Coronaviruses have caused three major epidemics since 2003, including the ongoing SARS-
CoV-2 pandemic. In each case, the emergence of coronavirus in our species has been …
CoV-2 pandemic. In each case, the emergence of coronavirus in our species has been …
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
The microbiota modulates gut immune homeostasis. Bacteria influence the development
and function of host immune cells, including T helper cells expressing interleukin-17A (TH17 …
and function of host immune cells, including T helper cells expressing interleukin-17A (TH17 …
Using ggtree to visualize data on tree‐like structures
G Yu - Current protocols in bioinformatics, 2020 - Wiley Online Library
Ggtree is an R/Bioconductor package for visualizing tree‐like structures and associated
data. After 5 years of continual development, ggtree has been evolved as a package suite …
data. After 5 years of continual development, ggtree has been evolved as a package suite …
[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
Phylogenetic trees and data are often stored in incompatible and inconsistent formats. The
outputs of software tools that contain trees with analysis findings are often not compatible …
outputs of software tools that contain trees with analysis findings are often not compatible …
Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome
C Chen, Y Zhou, H Fu, X Xiong, S Fang, H Jiang… - Nature …, 2021 - nature.com
Gut microbiota plays an important role in pig health and production. Still, availability of
sequenced genomes and functional information for most pig gut microbes remains limited …
sequenced genomes and functional information for most pig gut microbes remains limited …
ggtreeExtra: compact visualization of richly annotated phylogenetic data
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou… - Molecular biology …, 2021 - academic.oup.com
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA
A new variant of Streptococcus pyogenes serotype M1 (designated 'M1UK') has been
reported in the United Kingdom, linked with seasonal scarlet fever surges, marked increase …
reported in the United Kingdom, linked with seasonal scarlet fever surges, marked increase …