Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment

F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …

Phytoplankton and anthropogenic changes in pelagic environments

N Salmaso, M Tolotti - Hydrobiologia, 2021 - Springer
Abstract “Phytoplankton” is a loosely defined functional term, indicating a group of
organisms distributed into several taxonomic groups ranging from oxygenic photosynthetic …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

[HTML][HTML] Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes

PW MacKeigan, RE Garner, MÈ Monchamp, DA Walsh… - Harmful Algae, 2022 - Elsevier
Accurately identifying the species present in an ecosystem is vital to lake managers and
successful bioassessment programs. This is particularly important when monitoring …

A novel single-parameter approach for forecasting algal blooms

X Xiao, J He, H Huang, TR Miller, G Christakos… - Water research, 2017 - Elsevier
Harmful algal blooms frequently occur globally, and forecasting could constitute an essential
proactive strategy for bloom control. To decrease the cost of aquatic environmental …

Protist diversity and seasonal dynamics in Skagerrak plankton communities as revealed by metabarcoding and microscopy

S Gran‐Stadniczeñko, E Egge… - Journal of Eukaryotic …, 2019 - Wiley Online Library
Protist community composition and seasonal dynamics are of major importance for the
production of higher trophic levels, such as zooplankton and fish. Our aim was to reveal how …

Novel insights in cryptic diversity of snow and glacier ice algae communities combining 18S rRNA gene and ITS2 amplicon sequencing

D Remias, L Procházková, L Nedbalová… - FEMS Microbiology …, 2023 - academic.oup.com
Melting snow and glacier surfaces host microalgal blooms in polar and mountainous
regions. The aim of this study was to determine the dominant taxa at the species level in the …

Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis

NN Parulekar, P Kolekar, A Jenkins, S Kleiven… - PloS one, 2017 - journals.plos.org
Interactions between different phytoplankton taxa and heterotrophic bacterial communities
within aquatic environments can differentially support growth of various heterotrophic …

Comparative study of multiple approaches for identifying cultivable microalgae population diversity from freshwater samples

AA Badr, WM Fouad - Plos one, 2023 - journals.plos.org
The vast diversity of microalgae imposes the challenge of identifying them through the most
common and economical identification method, morphological identification, or through …

Diversity and cyclical seasonal transitions in the bacterial community in a large and deep perialpine lake

N Salmaso, D Albanese, C Capelli, A Boscaini… - Microbial ecology, 2018 - Springer
High-throughput sequencing (HTS) was used to analyze the seasonal variations in the
bacterioplankton community composition (BCC) in the euphotic layer of a large and deep …