Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

Microbial biodiversity and bioremediation assessment through omics approaches

H Chandran, M Meena, K Sharma - Frontiers in Environmental …, 2020 - frontiersin.org
Industrialization, population burst, and changing lifestyles have resulted in the genesis of
non-degradable pollutants languishing the environment and human health. Biological …

CRISPR-mediated adaptive immune systems in bacteria and archaea

R Sorek, CM Lawrence… - Annual review of …, 2013 - annualreviews.org
Effective clearance of an infection requires that the immune system rapidly detects and
neutralizes invading parasites while strictly avoiding self-antigens that would result in …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Population genomics of early events in the ecological differentiation of bacteria

BJ Shapiro, J Friedman, OX Cordero, SP Preheim… - science, 2012 - science.org
Genetic exchange is common among bacteria, but its effect on population diversity during
ecological differentiation remains controversial. A fundamental question is whether …

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

MF Polz, EJ Alm, WP Hanage - Trends in Genetics, 2013 - cell.com
Many bacterial and archaeal lineages have a history of extensive and ongoing horizontal
gene transfer and loss, as evidenced by the large differences in genome content even …

The genetic and ecophysiological diversity of Microcystis

GJ Dick, MB Duhaime, JT Evans… - Environmental …, 2021 - Wiley Online Library
Microcystis is a cyanobacterium that forms toxic blooms in freshwater ecosystems around
the world. Biological variation among taxa within the genus is apparent through genetic and …

Low‐diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

CNA Wong, P Ng, AE Douglas - Environmental microbiology, 2011 - Wiley Online Library
The bacteria in the fruitfly Drosophila melanogaster of different life stages was quantified by
454 pyrosequencing of 16S rRNA gene amplicons. The sequence reads were dominated by …

[HTML][HTML] Methodological approaches for studying the microbial ecology of drinking water distribution systems

I Douterelo, JB Boxall, P Deines, R Sekar, KE Fish… - Water research, 2014 - Elsevier
The study of the microbial ecology of drinking water distribution systems (DWDS) has
traditionally been based on culturing organisms from bulk water samples. The development …