Cancer driver mutations: predictions and reality

D Ostroverkhova, TM Przytycka… - Trends in Molecular …, 2023 - cell.com
Cancer cells accumulate many genetic alterations throughout their lifetime, but only a few of
them drive cancer progression, termed driver mutations. Driver mutations may vary between …

Genistein as a regulator of signaling pathways and microRNAs in different types of cancers

Z Javed, K Khan, J Herrera-Bravo, S Naeem… - Cancer Cell …, 2021 - Springer
Cancers are complex diseases orchestrated by a plethora of extrinsic and intrinsic factors.
Research spanning over several decades has provided better understanding of complex …

Clever Hans effect found in a widely used brain tumour MRI dataset

D Wallis, I Buvat - Medical image analysis, 2022 - Elsevier
Abstract Machine learning is revolutionising medical image analysis, and clearly the future
of the field lies in this direction. However, with increasing automation there is a danger of …

Machine learning methods for prediction of cancer driver genes: a survey paper

R Andrades… - Briefings in …, 2022 - academic.oup.com
Identifying the genes and mutations that drive the emergence of tumors is a critical step to
improving our understanding of cancer and identifying new directions for disease diagnosis …

Metabolic interplay in the tumor microenvironment: implications for immune function and anticancer response

R Youssef, R Maniar, J Khan, H Mesa - Current Issues in Molecular …, 2023 - mdpi.com
Malignant tumors exhibit rapid growth and high metabolic rates, similar to embryonic stem
cells, and depend on aerobic glycolysis, known as the “Warburg effect”. This understanding …

Missing value estimation of microarray data using Sim-GAN

SK Pati, MK Gupta, R Shai, A Banerjee… - … and Information Systems, 2022 - Springer
Microarray data analysis needs utmost care as it plays a significant role in cancer study. Due
to the excessive complexity of the data extraction process, it loses some relevant information …

Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks

M Nourbakhsh, K Degn, A Saksager… - Briefings in …, 2024 - academic.oup.com
The vast amount of available sequencing data allows the scientific community to explore
different genetic alterations that may drive cancer or favor cancer progression. Software …

Predicting functional consequences of mutations using molecular interaction network features

K Ozturk, H Carter - Human genetics, 2022 - Springer
Variant interpretation remains a central challenge for precision medicine. Missense variants
are particularly difficult to understand as they change only a single amino acid in a protein …

Discovering predisposing genes for hereditary breast cancer using deep learning

G Passi, S Lieberman, F Zahdeh, O Murik… - Briefings in …, 2024 - academic.oup.com
Breast cancer (BC) is the most common malignancy affecting Western women today. It is
estimated that as many as 10% of BC cases can be attributed to germline variants. However …

VIPpred: a novel model for predicting variant impact on phosphorylation events driving carcinogenesis

X Xu, Y Li, T Chen, C Hou, L Yang, P Zhu… - Briefings in …, 2024 - academic.oup.com
Disrupted protein phosphorylation due to genetic variation is a widespread phenomenon
that triggers oncogenic transformation of healthy cells. However, few relevant …