From a melt of rings to chromosome territories: the role of topological constraints in genome folding

JD Halverson, J Smrek, K Kremer… - Reports on Progress in …, 2014 - iopscience.iop.org
We review pro and contra of the hypothesis that generic polymer properties of topological
constraints are behind many aspects of chromatin folding in eukaryotic cells. For that …

Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics

JD Halverson, WB Lee, GS Grest… - The Journal of …, 2011 - pubs.aip.org
Molecular dynamics simulations were conducted to investigate the structural properties of
melts of nonconcatenated ring polymers and compared to melts of linear polymers. The …

Understanding and modeling polymers: The challenge of multiple scales

F Schmid - ACS Polymers Au, 2022 - ACS Publications
Polymer materials are multiscale systems by definition. Already the description of a single
macromolecule involves a multitude of scales, and cooperative processes in polymer …

Semiflexible chains at surfaces: Worm-like chains and beyond

J Baschnagel, H Meyer, J Wittmer, I Kulić, H Mohrbach… - Polymers, 2016 - mdpi.com
We give an extended review of recent numerical and analytical studies on semiflexible
chains near surfaces undertaken at Institut Charles Sadron (sometimes in collaboration) with …

Analysis of the gel point of polymer model networks by computer simulations

M Lang, T Müller - Macromolecules, 2020 - ACS Publications
The gel point of end-linked model networks is determined from computer simulation data. It
is shown that the difference between the true gel point conversion, pc, and the ideal mean …

Conformation of ring polymers in 2D constrained environments

G Witz, K Rechendorff, J Adamcik, G Dietler - Physical review letters, 2011 - APS
The combination of ring closure and spatial constraints has a fundamental effect on the
statistics of semiflexible polymers such as DNA. However, studies of the interplay between …

Coil–globule transition in two-dimensional polymer chains in an explicit solvent

P Polanowski, A Sikorski - Soft Matter, 2023 - pubs.rsc.org
The structure of two-dimensional polymer chains in a solvent at different temperatures is still
far from being fully understood. Computer simulations of high-density macromolecular …

Intrinsic chain stiffness in flexible linear polymers under extreme confinement

J Kim, JM Kim, C Baig - Polymer, 2021 - Elsevier
Polymer behaviors at interfaces or in narrowly confined systems have important implications
in a variety of practical applications, including polymer processing, polymer films, adhesion …

Interfacial Polymer Rheology of Entangled Short-Chain Branched Ring Melts in Shear Flow

TY Ha, SH Jeong, C Baig - Macromolecules, 2024 - ACS Publications
We present a detailed analysis of the rheological behavior of entangled short-chain-
branched (SCB) ring polymers at interfaces via direct comparison with the corresponding …

Intrinsic structure and dynamics of monolayer ring polymer melts

J Kim, JM Kim, C Baig - Soft Matter, 2021 - pubs.rsc.org
We present the general structural and dynamical characteristics of flexible ring polymers in
narrowly confined two-dimensional (2D) melt systems using atomistic molecular dynamics …