CpG islands and the regulation of transcription

AM Deaton, A Bird - Genes & development, 2011 - genesdev.cshlp.org
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …

DNA methylation patterns and epigenetic memory

A Bird - Genes & development, 2002 - genesdev.cshlp.org
The character of a cell is defined by its constituent proteins, which are the result of specific
patterns of gene expression. Crucial determinants of gene expression patterns are DNA …

Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes

ZJ Zang, I Cutcutache, SL Poon, SL Zhang… - Nature …, 2012 - nature.com
Gastric cancer is a major cause of global cancer mortality. We surveyed the spectrum of
somatic alterations in gastric cancer by sequencing the exomes of 15 gastric …

[HTML][HTML] CpG islands–'a rough guide'

RS Illingworth, AP Bird - FEBS letters, 2009 - Elsevier
Mammalian genomes are punctuated by DNA sequences containing an atypically high
frequency of CpG sites termed CpG islands (CGIs). CGIs generally lack DNA methylation …

Orphan CpG islands identify numerous conserved promoters in the mammalian genome

RS Illingworth, U Gruenewald-Schneider, S Webb… - PLoS …, 2010 - journals.plos.org
CpG islands (CGIs) are vertebrate genomic landmarks that encompass the promoters of
most genes and often lack DNA methylation. Querying their apparent importance, the …

Robustness and evolvability in living systems

A Wagner - 2013 - torrossa.com
Living things are unimaginably complex, yet they have withstood a withering assault of
harmful influences over several billion years. These influences include cataclysmic changes …

Structure, function and evolution of CpG island promoters

F Antequera - Cellular and Molecular Life Sciences CMLS, 2003 - Springer
Mammalian promoters belong to two different categories in terms of base composition and
DNA methylation. In humans and mice, approximately 60% of all promoters colocalize with …

Of men and mice: modeling the fragile X syndrome

R Dahlhaus - Frontiers in molecular neuroscience, 2018 - frontiersin.org
The Fragile X Syndrome (FXS) is one of the most common forms of inherited intellectual
disability in all human societies. Caused by the transcriptional silencing of a single gene, the …

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

L Ponger, D Mouchiroud - Bioinformatics, 2002 - academic.oup.com
Results: CpGProD is an application for identifying mammalian promoter regions associated
with CpG islands in large genomic sequences. Although it is strictly dedicated to this …

CpG island chromatin: a platform for gene regulation

NP Blackledge, R Klose - Epigenetics, 2011 - Taylor & Francis
The majority of mammalian gene promoters are encompassed within regions of the genome
called CpG islands that have an elevated level of non-methylated CpG dinucleotides …