Species are hypotheses: avoid connectivity assessments based on pillars of sand

E Pante, N Puillandre, A Viricel… - Molecular …, 2015 - Wiley Online Library
Connectivity among populations determines the dynamics and evolution of populations, and
its assessment is essential in ecology in general and in conservation biology in particular …

Invertebrate population genetics across Earth's largest habitat: The deep‐sea floor

ML Taylor, CN Roterman - Molecular Ecology, 2017 - Wiley Online Library
Despite the deep sea being the largest habitat on Earth, there are just 77 population genetic
studies of invertebrates (115 species) inhabiting non‐chemosynthetic ecosystems on the …

Lost in parameter space: a road map for stacks

JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

SJ Zimmerman, CL Aldridge, SJ Oyler-McCance - BMC genomics, 2020 - Springer
Background Use of genomic tools to characterize wildlife populations has increased in
recent years. In the past, genetic characterization has been accomplished with more …

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

ABA Shafer, CR Peart, S Tusso… - Methods in Ecology …, 2017 - Wiley Online Library
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …

Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies

AD Leaché, BL Banbury, J Felsenstein… - Systematic …, 2015 - academic.oup.com
Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing
in part to their ubiquity throughout the genome and ease of collection. Restriction site …

From integrative taxonomy to species description: one step beyond

E Pante, C Schoelinck, N Puillandre - Systematic Biology, 2015 - academic.oup.com
MATERIALS AND METHODS We performed a literature survey using the Web of Science
research tool, limited to the scientific articles published between 2006 and 2013, and using …

Species-level para-and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera

M Mutanen, SM Kivelä, RA Vos… - Systematic …, 2016 - academic.oup.com
The proliferation of DNA data is revolutionizing all fields of systematic research. DNA
barcode sequences, now available for millions of specimens and several hundred thousand …

Standardized nuclear markers improve and homogenize species delimitation in Metazoa

L Dietz, J Eberle, C Mayer, S Kukowka… - Methods in Ecology …, 2023 - Wiley Online Library
Species are the fundamental units of life and evolution. Their recognition is essential for
science and society. Molecular methods have been increasingly used for the identification of …

The application of DNA barcodes for the identification of marine crustaceans from the North Sea and adjacent regions

MJ Raupach, A Barco, D Steinke, J Beermann… - PloS one, 2015 - journals.plos.org
During the last years DNA barcoding has become a popular method of choice for molecular
specimen identification. Here we present a comprehensive DNA barcode library of various …