Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

Computational methods for transcriptome annotation and quantification using RNA-seq

M Garber, MG Grabherr, M Guttman, C Trapnell - Nature methods, 2011 - nature.com
High-throughput RNA sequencing (RNA-seq) promises a comprehensive picture of the
transcriptome, allowing for the complete annotation and quantification of all genes and their …

Alternative splicing: increasing diversity in the proteomic world

BR Graveley - TRENDS in Genetics, 2001 - cell.com
How can the genome of Drosophila melanogaster contain fewer genes than the
undoubtedly simpler organism Caenorhabditis elegans? The answer must lie within their …

Variation is the spice of life

L Kruglyak, DA Nickerson - Nature genetics, 2001 - nature.com
Assembling a comprehensive catalog of common human sequence polymorphisms is a key
goal of the Human Genome Project. The International SNP Map Working Group has …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Using the transcriptome to annotate the genome

S Saha, AB Sparks, C Rago, V Akmaev, CJ Wang… - Nature …, 2002 - nature.com
A remaining challenge for the human genome project involves the identification and
annotation of expressed genes. The public and private sequencing efforts have identified∼ …

Experimental annotation of the human genome using microarray technology

DD Shoemaker, EE Schadt, CD Armour, YD He… - Nature, 2001 - nature.com
The most important product of the sequencing of a genome is a complete, accurate
catalogue of genes and their products, primarily messenger RNA transcripts and their …

The transcriptional activity of human Chromosome 22

JL Rinn, G Euskirchen, P Bertone… - Genes & …, 2003 - genesdev.cshlp.org
A DNA microarray representing nearly all of the unique sequences of human Chromosome
22 was constructed and used to measure global-transcriptional activity in placental poly (A)+ …

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

F Desiere, EW Deutsch, AI Nesvizhskii, P Mallick… - Genome biology, 2005 - Springer
A crucial aim upon the completion of the human genome is the verification and functional
annotation of all predicted genes and their protein products. Here we describe the mapping …

The Eimeria genome projects: a sequence of events

MW Shirley, A Ivens, A Gruber, AMBN Madeira… - Trends in …, 2004 - cell.com
An international consortium is the driving force behind several new genome-related projects,
mainly focused on Eimeria tenella, the cause of avian, caecal coccidiosis. The largest …