Protein dynamics and function from solution state NMR spectroscopy

M Kovermann, P Rogne, M Wolf-Watz - Quarterly reviews of …, 2016 - cambridge.org
It is well-established that dynamics are central to protein function; their importance is
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …

Paramagnetic tagging of diamagnetic proteins for solution NMR

F Rodriguez‐Castañeda, P Haberz… - Magnetic …, 2006 - Wiley Online Library
In this article, approaches towards the paramagnetic tagging of diamagnetic proteins are
reviewed. Alignment can be achieved by adding paramagnetic fusion proteins or peptides to …

Predicting the locations of cryptic pockets from single protein structures using the PocketMiner graph neural network

A Meller, MD Ward, JH Borowsky, JM Lotthammer… - Biophysical journal, 2023 - cell.com
Cryptic pockets expand the scope of drug discovery by enabling targeting of proteins
currently considered undruggable because they lack pockets in their ground state structures …

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

OF Lange, NA Lakomek, C Fares, GF Schroder… - science, 2008 - science.org
Protein dynamics are essential for protein function, and yet it has been challenging to
access the underlying atomic motions in solution on nanosecond-to-microsecond time …

Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins

P Maragakis, K Lindorff-Larsen… - The Journal of …, 2008 - ACS Publications
A molecular-level understanding of the function of a protein requires knowledge of both its
structural and dynamic properties. NMR spectroscopy allows the measurement of …

Quantitative analysis of protein backbone dynamics in microcrystalline ubiquitin by solid-state NMR spectroscopy

P Schanda, BH Meier, M Ernst - Journal of the American Chemical …, 2010 - ACS Publications
Characterization of protein dynamics by solid-state NMR spectroscopy requires robust and
accurate measurement protocols, which are not yet fully developed. In this study, we …

Correlated motions are a fundamental property of β-sheets

RB Fenwick, L Orellana, S Esteban-Martín… - Nature …, 2014 - nature.com
Correlated motions in proteins can mediate fundamental biochemical processes such as
signal transduction and allostery. The mechanisms that underlie these processes remain …

Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics

NA Lakomek, KFA Walter, C Farès, OF Lange… - Journal of biomolecular …, 2008 - Springer
Residual dipolar couplings (RDCs) provide information about the dynamic average
orientation of inter-nuclear vectors and amplitudes of motion up to milliseconds. They …

Exact distances and internal dynamics of perdeuterated ubiquitin from NOE buildups

B Vögeli, TF Segawa, D Leitz, A Sobol… - Journal of the …, 2009 - ACS Publications
It is proposed to convert nuclear Overhauser effects (NOEs) into relatively precise distances
for detailed structural studies of proteins. To this purpose, it is demonstrated that the …

Recent advances in solid-state relaxation dispersion techniques

P Rovo - Solid State Nuclear Magnetic Resonance, 2020 - Elsevier
This review describes two rotating-frame (R 1 ρ) relaxation dispersion methods, namely the
Bloch-McConnell Relaxation Dispersion and the Near-rotary Resonance Relaxation …