Memory efficient folding algorithms for circular RNA secondary structures

IL Hofacker, PF Stadler - Bioinformatics, 2006 - academic.oup.com
Background: A small class of RNA molecules, in particular the tiny genomes of viroids, are
circular. Yet most structure prediction algorithms handle only linear RNAs. The most …

Dynamic programming for detecting, tracking, and matching deformable contours

D Geiger, A Gupta, LA Costa… - IEEE Transactions on …, 1995 - ieeexplore.ieee.org
The problem of segmenting an image into separate regions and tracking them over time is
one of the most significant problems in vision. Terzopoulos et al.(1987) proposed an …

Optimum polygonal approximation of digitized curves

JC Perez, E Vidal - Pattern recognition letters, 1994 - Elsevier
Given N ordered points in the plane and a constant M< N, an efficient algorithm is proposed
to find M points, among those given, which define a polygonal curve that is a globally …

Video object segmentation by tracking regions

W Brendel, S Todorovic - 2009 IEEE 12th international …, 2009 - ieeexplore.ieee.org
This paper presents an approach to unsupervised segmentation of moving and static objects
occurring in a video. Objects are, in general, spatially cohesive and characterized by locally …

Flexible syntactic matching of curves and its application to automatic hierarchical classification of silhouettes

Y Gdalyahu, D Weinshall - IEEE Transactions on Pattern …, 1999 - ieeexplore.ieee.org
Curve matching is one instance of the fundamental correspondence problem. Our flexible
algorithm is designed to match curves under substantial deformations and arbitrary large …

Applications of approximate string matching to 2D shape recognition

H Bunke, U Bühler - Pattern recognition, 1993 - Elsevier
A new method for the recognition of arbitrary two-dimensional (2D) shapes is described. It is
based on string edit distance computation. The recognition method is invariant under …

Robust contour matching via the order-preserving assignment problem

C Scott, R Nowak - IEEE Transactions on Image Processing, 2006 - ieeexplore.ieee.org
A common approach to determining corresponding points on two shapes is to compute the
cost of each possible pairing of points and solve the assignment problem (weighted bipartite …

Combining appearance and topology for wide baseline matching

D Tell, S Carlsson - Computer Vision—ECCV 2002: 7th European …, 2002 - Springer
The problem of establishing image-to-image correspondences is fundamental in computer
vision. Recently, several wide baseline matching algorithms capable of handling large …

Median strings: A review

X Jiang, H Bunke, J Csirik - Data Mining in Time Series Databases, 2004 - World Scientific
Time series can be effectively represented by strings. The median concept is useful in
various contexts. In this chapter its adaptation to the domain of strings is discussed. We …

A branch elimination-based efficient algorithm for large-scale multiple longest common subsequence problem

S Wei, Y Wang, Y Cheung - IEEE Transactions on Knowledge …, 2021 - ieeexplore.ieee.org
It is a key issue to find out all longest common subsequences of multiple sequences over a
set of finite alphabets, namely MLCS problem, in computational biology, pattern recognition …