Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Biomarker development in the precision medicine era: lung cancer as a case study

AJ Vargas, CC Harris - Nature reviews cancer, 2016 - nature.com
Precision medicine relies on validated biomarkers with which to better classify patients by
their probable disease risk, prognosis and/or response to treatment. Although …

A protein interaction landscape of breast cancer

M Kim, J Park, M Bouhaddou, K Kim, A Rojc, M Modak… - Science, 2021 - science.org
INTRODUCTION Advances in DNA sequencing technology have enabled the widespread
analysis of breast tumor genomes, creating a catalog of genetic mutations that may initiate or …

The functional impact of alternative splicing in cancer

H Climente-González, E Porta-Pardo, A Godzik… - Cell reports, 2017 - cell.com
Alternative splicing changes are frequently observed in cancer and are starting to be
recognized as important signatures for tumor progression and therapy. However, their …

Modern temporal network theory: a colloquium

P Holme - The European Physical Journal B, 2015 - Springer
The power of any kind of network approach lies in the ability to simplify a complex system so
that one can better understand its function as a whole. Sometimes it is beneficial, however …

The BioGRID interaction database: 2015 update

A Chatr-Aryamontri, BJ Breitkreutz… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
http://thebiogrid. org) is an open access database that houses genetic and protein …

Analyzing and interpreting genome data at the network level with ConsensusPathDB

R Herwig, C Hardt, M Lienhard, A Kamburov - Nature protocols, 2016 - nature.com
ConsensusPathDB consists of a comprehensive collection of human (as well as mouse and
yeast) molecular interaction data integrated from 32 different public repositories and a web …

Temporal networks

P Holme, J Saramäki - Physics reports, 2012 - Elsevier
A great variety of systems in nature, society and technology–from the web of sexual contacts
to the Internet, from the nervous system to power grids–can be modeled as graphs of …

Network medicine: a network-based approach to human disease

AL Barabási, N Gulbahce, J Loscalzo - Nature reviews genetics, 2011 - nature.com
Given the functional interdependencies between the molecular components in a human cell,
a disease is rarely a consequence of an abnormality in a single gene, but reflects the …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …