Rigidity versus flexibility: the dilemma of understanding protein thermal stability

A Karshikoff, L Nilsson, R Ladenstein - The FEBS journal, 2015 - Wiley Online Library
The role of fluctuations in protein thermostability has recently received considerable
attention. In the current literature a dualistic picture can be found: thermostability seems to …

Disulfide bonds and the stability of globular proteins

SF Betz - Protein Science, 1993 - Wiley Online Library
An understanding of the forces that contribute to stability is pivotal in solving the protein‐
folding problem. Classical theory suggests that disulfide bonds stabilize proteins by …

SWISS‐MODEL and the Swiss‐Pdb Viewer: an environment for comparative protein modeling

N Guex, MC Peitsch - electrophoresis, 1997 - Wiley Online Library
Comparative protein modeling is increasingly gaining interest since it is of great assistance
during the rational design of mutagenesis experiments. The availability of this method, and …

Factors enhancing protein thermostability

S Kumar, CJ Tsai, R Nussinov - Protein engineering, 2000 - academic.oup.com
Several sequence and structural factors have been proposed to contribute toward greater
stability of thermophilic proteins. Here we present a statistical examination of structural and …

CH⋯ π-interactions in proteins

M Brandl, MS Weiss, A Jabs, J Sühnel… - Journal of molecular …, 2001 - Elsevier
A non-redundant set of 1154 protein structures from the Protein Data Bank was examined
with respect to close interactions between CH-donor and π-acceptor groups. A total of …

Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey

A Szilágyi, P Závodszky - Structure, 2000 - cell.com
Background: Proteins from thermophilic organisms usually show high intrinsic thermal
stability but have structures that are very similar to their mesophilic homologues. From …

How do thermophilic proteins deal with heat?

S Kumar, R Nussinov - Cellular and Molecular Life Sciences CMLS, 2001 - Springer
Recent years have witnessed an explosion of sequence and structural information for
proteins from hyperthermophilic and thermophilic organisms. Complete genome sequences …

[PDF][PDF] Malate dehydrogenases-structure and function

P Minarik, N Tomaskova, M Kollarova… - General physiology and …, 2002 - gpb.sav.sk
Malate dehydrogenases (MDH, L-malate: NAD oxidoreductase, EC 1.1. 1.37), catalyze the
NAD/NADH-dependent interconversion of the substrates malate and oxaloacetate. This …

Protein–protein interaction and quaternary structure

J Janin, RP Bahadur, P Chakrabarti - Quarterly reviews of biophysics, 2008 - cambridge.org
Protein–protein recognition plays an essential role in structure and function. Specific non-
covalent interactions stabilize the structure of macromolecular assemblies, exemplified in …

Thermozymes: identifying molecular determinants of protein structural and functional stability

C Vieille, JG Zeikus - Trends in Biotechnology, 1996 - cell.com
Thermozymes are enzymes that evolved in thermophiles (organisms thriving at 60-8O'C)
and hyperthermophiles(organisms thriving at 280%). Whereas thermophiles are classed as …