Long noncoding RNA (lncRNA)-mediated competing endogenous RNA networks provide novel potential biomarkers and therapeutic targets for colorectal cancer

L Wang, KB Cho, Y Li, G Tao, Z Xie, B Guo - International journal of …, 2019 - mdpi.com
Colorectal cancer (CRC) is the third most common cancer and has a high metastasis and
reoccurrence rate. Long noncoding RNAs (lncRNAs) play an important role in CRC growth …

Trends in the development of miRNA bioinformatics tools

L Chen, L Heikkinen, C Wang, Y Yang… - Briefings in …, 2019 - academic.oup.com
MicroRNAs (miRNAs) are small noncoding RNAs that regulate gene expression via
recognition of cognate sequences and interference of transcriptional, translational or …

LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine

P Wang, Q Guo, Y Qi, Y Hao, Y Gao, H Zhi… - Nucleic acids …, 2022 - academic.oup.com
LncACTdb 3.0 is a comprehensive database of experimentally supported interactions
among competing endogenous RNA (ceRNA) and the corresponding personalized …

NcPath: A novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways

Z Li, Y Zhang, J Fang, Z Xu, H Zhang, M Mao… - …, 2023 - academic.oup.com
Non-coding RNAs play important roles in transcriptional processes and participate in the
regulation of various biological functions, in particular miRNAs and lncRNAs. Despite their …

LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low-and high-throughput experiments

P Wang, X Li, Y Gao, Q Guo, Y Wang… - Nucleic acids …, 2019 - academic.oup.com
Abstract We describe LncACTdb 2.0 (http://www. bio-bigdata. net/LncACTdb/), an updated
and significantly expanded database which provides comprehensive information of …

Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development

X Meng, P Zhang, Q Chen, J Wang, M Chen - BMC genomics, 2018 - Springer
Background Leaf development is a complex biological process that is accompanied by wide
transcriptional changes. Many protein-coding genes have been characterized in plant …

Database resources of the BIG data center in 2019

BIGDC Members - Nucleic acids research, 2018 - pmc.ncbi.nlm.nih.gov
Abstract The BIG Data Center at Beijing Institute of Genomics (BIG) of the Chinese Academy
of Sciences provides a suite of database resources in support of worldwide research …

Competitive endogenous RNA in colorectal cancer: a systematic review

H Shuwen, Z Qing, Z Yan, Y Xi - Gene, 2018 - Elsevier
Colorectal cancer is one of the most common malignant tumours. Competitive endogenous
RNA (ceRNA) networks have been hypothesized, in which various RNAs regulate each …

Toward integrated multi-omics intervention: rice trait improvement and stress management

Z Iqbal, MS Iqbal, MIR Khan, MI Ansari - Frontiers in Plant Science, 2021 - frontiersin.org
Rice (Oryza sativa) is an imperative staple crop for nearly half of the world's population.
Challenging environmental conditions encompassing abiotic and biotic stresses negatively …

PlantCircNet: a database for plant circRNA–miRNA–mRNA regulatory networks

P Zhang, X Meng, H Chen, Y Liu, J Xue, Y Zhou… - Database, 2017 - academic.oup.com
Circular RNA (circRNA) is a novel type of endogenous noncoding RNA with covalently
closed loop structures, which are widely expressed in various tissues and have functional …