Deuterium‐and tritium‐labelled compounds: applications in the life sciences

J Atzrodt, V Derdau, WJ Kerr… - Angewandte chemie …, 2018 - Wiley Online Library
Hydrogen isotopes are unique tools for identifying and understanding biological and
chemical processes. Hydrogen isotope labelling allows for the traceless and direct …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

QM/MM methods for biomolecular systems

HM Senn, W Thiel - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Two are better than one: Quantum mechanics/molecular mechanics (QM/MM) methods are
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …

Good vibrations in enzyme-catalysed reactions

S Hay, NS Scrutton - Nature chemistry, 2012 - nature.com
Fast motions (femtosecond to picosecond) and their potential involvement during enzyme-
catalysed reactions have ignited considerable interest in recent years. Their influence on …

QM/MM methods for biological systems

HM Senn, W Thiel - Atomistic approaches in modern biology: from …, 2007 - Springer
Thirty years after the seminal contribution by Warshel and Levitt, we review the state of the
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …

Site-specific solvation of the photoexcited protochlorophyllide a in methanol: formation of the hydrogen-bonded intermediate state induced by hydrogen-bond …

GJ Zhao, KL Han - Biophysical journal, 2008 - cell.com
The site-specific solvation of the photoexcited protochlorophyllide a (Pchlide a) in methanol
solvent was investigated using the time-dependent density functional theory method for the …

Tunneling and dynamics in enzymatic hydride transfer

ZD Nagel, JP Klinman - Chemical reviews, 2006 - ACS Publications
Enzymes continue to be the subject of intensive research efforts because of their ability to
accelerate chemical reactions by factors as large as 1020 with extraordinary selectivity. 1 …

Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection

SM Sullivan, T Holyoak - Proceedings of the National …, 2008 - National Acad Sciences
The induced fit and conformational selection/population shift models are two extreme cases
of a continuum aimed at understanding the mechanism by which the final key-lock or active …

How and when does an enzyme react? Unraveling α-Amylase catalytic activity with enhanced sampling techniques

S Das, U Raucci, RPP Neves, MJ Ramos… - ACS …, 2023 - ACS Publications
Enzymatic catalysis is a complex process that can involve multiple conformations of the
enzyme: substrate complex and several competitive reaction pathways, resulting in a multi …

[HTML][HTML] Update 1 of: Tunneling and dynamics in enzymatic hydride transfer

ZD Nagel, JP Klinman - Chemical reviews, 2010 - ncbi.nlm.nih.gov
Enzymes continue to be the subject of intensive research efforts because of their ability to
accelerate chemical reactions by factors as large as 1020 with extraordinary selectivity. 1 …