ENMeval 2.0: Redesigned for customizable and reproducible modeling of species' niches and distributions

JM Kass, R Muscarella, PJ Galante… - Methods in Ecology …, 2021 - Wiley Online Library
Quantitative evaluations to optimize complexity have become standard for avoiding
overfitting of ecological niche models (ENMs) that estimate species' potential geographic …

Ecological niche models and species distribution models in marine environments: A literature review and spatial analysis of evidence

SM Melo-Merino, H Reyes-Bonilla, A Lira-Noriega - Ecological Modelling, 2020 - Elsevier
In recent years, the use of ecological niche models (ENMs) and species distribution models
(SDMs) to explore the patterns and processes behind observed distribution of species has …

Predictive performance of presence‐only species distribution models: a benchmark study with reproducible code

R Valavi, G Guillera‐Arroita… - Ecological …, 2022 - Wiley Online Library
Species distribution modeling (SDM) is widely used in ecology and conservation. Currently,
the most available data for SDM are species presence‐only records (available through …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q Xia, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

A standard protocol for reporting species distribution models

D Zurell, J Franklin, C König, PJ Bouchet… - …, 2020 - Wiley Online Library
Species distribution models (SDMs) constitute the most common class of models across
ecology, evolution and conservation. The advent of ready‐to‐use software packages and …

Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling

N Sillero, S Arenas-Castro, U Enriquez‐Urzelai… - Ecological …, 2021 - Elsevier
The use of correlative ecological niche models has highly increased in the last decade.
Despite all literature and textbooks in this field, few practical guidelines exist on the correct …

ntbox: An r package with graphical user interface for modelling and evaluating multidimensional ecological niches

L Osorio‐Olvera, A Lira‐Noriega… - Methods in Ecology …, 2020 - Wiley Online Library
Biodiversity studies rely heavily on estimates of species' distributions often obtained through
ecological niche modelling. Numerous software packages exist that allow users to model …

MaxEnt Modelling and Impact of Climate Change on Habitat Suitability Variations of Economically Important Chilgoza Pine (Pinus gerardiana Wall.) in South Asia

AM Khan, Q Li, Z Saqib, N Khan, T Habib, N Khalid… - Forests, 2022 - mdpi.com
Chilgoza pine is an economically and ecologically important evergreen coniferous tree
species of the dry and rocky temperate zone, and a native of south Asia. This species is …

Opening the black box: An open‐source release of Maxent

SJ Phillips, RP Anderson, M Dudík, RE Schapire… - …, 2017 - Wiley Online Library
This software note announces a new open‐source release of the Maxent software for
modeling species distributions from occurrence records and environmental data, and …

blockCV: An r package for generating spatially or environmentally separated folds for k-fold cross-validation of species distribution models

R Valavi, J Elith, JJ Lahoz-Monfort, G Guillera-Arroita - Biorxiv, 2018 - biorxiv.org
When applied to structured data, conventional random cross-validation techniques can lead
to underestimation of prediction error, and may result in inappropriate model selection. We …