Moderation of Structural DNA Properties by Coupled Dinucleotide Contents in Eukaryotes

A Sievers, L Sauer, M Bisch, J Sprengel, M Hausmann… - Genes, 2023 - mdpi.com
Dinucleotides are known as determinants for various structural and physiochemical
properties of DNA and for binding affinities of proteins to DNA. These properties (eg …

Efficient Image Feature Extraction through Simultaneous Training of Nested U-Nets

SK Mishra, DW Heermann - 2023 9th International Conference …, 2023 - ieeexplore.ieee.org
In the last few decades, coarse-graining emerged as a tool in various fields to optimize the
speed-accuracy complexity of a system and extract prominent features from it. But, in the …

Intra-Chromosomal Potentials from Nucleosomal Positioning Data

K Li, NN Oiwa, SK Mishra, DW Heermann - arXiv preprint arXiv …, 2021 - arxiv.org
No systematic method exists to derive intra-chromosomal potentials between nucleosomes
along a chromosome consistently across a given genome. Such potentials can yield …

Inter-nucleosomal potentials from nucleosomal positioning data

K Li, NN Oiwa, SK Mishra, DW Heermann - The European Physical …, 2022 - Springer
No systematic method exists to derive inter-nucleosomal potentials between nucleosomes
along a chromosome consistently across a given genome. Such potentials can yield …