Subtype‐independent near full‐length HIV‐1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management

S Grossmann, P Nowak, U Neogi - African Journal of …, 2015 - journals.lww.com
Abstract Introduction: HIV-1 near full-length genome (HIV-NFLG) sequencing from plasma is
an attractive multidimensional tool to apply in large-scale population-based molecular …

Molecular epidemiology and trends in HIV-1 transmitted drug resistance in mozambique 1999–2018

N Ismael, E Wilkinson, I Mahumane, H Gemusse… - Viruses, 2022 - mdpi.com
HIV drug resistance (HIVDR) can become a public health concern, especially in low-and
middle-income countries where genotypic testing for people initiating antiretroviral therapy …

Validation of variant assembly using HAPHPIPE with Next-Generation sequence data from viruses

KM Gibson, MC Steiner, U Rentia, ML Bendall… - Viruses, 2020 - mdpi.com
Next-generation sequencing (NGS) offers a powerful opportunity to identify low-abundance,
intra-host viral sequence variants, yet the focus of many bioinformatic tools on consensus …

Molecular epidemiology of HIV-1 subtype G in the Russian Federation

A Murzakova, D Kireev, P Baryshev, A Lopatukhin… - Viruses, 2019 - mdpi.com
Although HIV-1 subtype A has predominated in Russia since the end of the 20th century,
other viral variants also circulate in this country. The dramatic outbreak of HIV-1 subtype G in …

Genetic Characterization of HIV-1 Subtype A1/C/D/B/K Unique Recombinant Form from Eastern Cape, South Africa

OV Adeniyi, CL Obi, D Ter Goon… - AIDS Research and …, 2021 - liebertpub.com
HIV-1 subtype C is the predominant circulating virus in South Africa. There are reports of non-
C subtypes emerging in different regions of the country, however, very little information …

Near full-length HIV-1 subtype B sequences from the early South African epidemic, detecting a BD unique recombinant form (URF) from a sample in 1985

AE Obasa, S Engelbrecht, GB Jacobs - Scientific Reports, 2019 - nature.com
HIV-1 subtype C is the most prevalent subtype in South Africa. Although subtype B was
previously detected in South Africa, there is limited sequence information available. We …

Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India

SV Alampalli, MM Thomson, R Sampathkumar… - PLoS …, 2017 - journals.plos.org
India has the third largest number of HIV-1-infected individuals accounting for approximately
2.1 million people, with a predominance of circulating subtype C strains and a low …

[PDF][PDF] Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018. Viruses 2022, 14, 1992

N Ismael, E Wilkinson, I Mahumane, H Gemusse… - 2022 - academia.edu
HIV drug resistance (HIVDR) can become a public health concern, especially in low-and
middle-income countries where genotypic testing for people initiating antiretroviral therapy …

Characterization of HIV-1 subtype B near full-length genome sequences identified at the start of HIV epidemic in South Africa

AE Obasa - 2017 - scholar.sun.ac.za
Abstract ENGLISH SUMMARY: South Africa is home to approximately 20.0% of the global
Human Immunodeficiency Virus (HIV) infected population. The first reported cases of HIV-1 …

[PDF][PDF] Enhancing access and utility of assays for ART initiation and monitoring in HIV patients in resource-limited settings

BA Haile - 2017 - scholar.archive.org
Background: Strategies to expand access to routine HIV monitoring assays in resource
limited settings (RLS) include the use of point-of-care (POC) tests and dried blood spots …