Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

S Alseekh, A Aharoni, Y Brotman, K Contrepois… - Nature …, 2021 - nature.com
Mass spectrometry-based metabolomics approaches can enable detection and
quantification of many thousands of metabolite features simultaneously. However …

Artificial intelligence for natural product drug discovery

MW Mullowney, KR Duncan, SS Elsayed… - Nature Reviews Drug …, 2023 - nature.com
Developments in computational omics technologies have provided new means to access
the hidden diversity of natural products, unearthing new potential for drug discovery. In …

[HTML][HTML] microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data

S Zuffa, R Schmid, A Bauermeister, PW P. Gomes… - Nature …, 2024 - nature.com
Abstract microbeMASST, a taxonomically informed mass spectrometry (MS) search tool,
tackles limited microbial metabolite annotation in untargeted metabolomics experiments …

[HTML][HTML] Reverse metabolomics for the discovery of chemical structures from humans

EC Gentry, SL Collins, M Panitchpakdi, P Belda-Ferre… - Nature, 2024 - nature.com
Determining the structure and phenotypic context of molecules detected in untargeted
metabolomics experiments remains challenging. Here we present reverse metabolomics as …

MetaboLights: open data repository for metabolomics

O Yurekten, T Payne, N Tejera… - Nucleic acids …, 2024 - academic.oup.com
MetaboLights is a global database for metabolomics studies including the raw experimental
data and the associated metadata. The database is cross-species and cross-technique and …

[HTML][HTML] New software tools, databases, and resources in metabolomics: Updates from 2020

BB Misra - Metabolomics, 2021 - Springer
Background Precision medicine, space exploration, drug discovery to characterization of
dark chemical space of habitats and organisms, metabolomics takes a centre stage in …

[HTML][HTML] Advances in decomposing complex metabolite mixtures using substructure-and network-based computational metabolomics approaches

MA Beniddir, KB Kang, G Genta-Jouve, F Huber… - Natural product …, 2021 - pubs.rsc.org
Covering: up to the end of 2020 Recently introduced computational metabolome mining
tools have started to positively impact the chemical and biological interpretation of …

[HTML][HTML] Enhancing untargeted metabolomics using metadata-based source annotation

JM Gauglitz, KA West, W Bittremieux, CL Williams… - Nature …, 2022 - nature.com
Human untargeted metabolomics studies annotate only~ 10% of molecular features. We
introduce reference-data-driven analysis to match metabolomics tandem mass spectrometry …

[HTML][HTML] Metabolomics and complementary techniques to investigate the plant phytochemical cosmos

H Tsugawa, A Rai, K Saito, R Nakabayashi - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to 2021 Plants and their associated microbial communities are known to
produce millions of metabolites, a majority of which are still not characterized and are …

[HTML][HTML] Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

W Bittremieux, NE Avalon, SP Thomas… - Nature …, 2023 - nature.com
Despite the increasing availability of tandem mass spectrometry (MS/MS) community
spectral libraries for untargeted metabolomics over the past decade, the majority of acquired …