Active microorganisms in soil: critical review of estimation criteria and approaches

E Blagodatskaya, Y Kuzyakov - Soil Biology and Biochemistry, 2013 - Elsevier
Microbial functioning refers to microbial activity because only the active microorganisms
drive biogeochemical processes. Despite the importance of active microorganisms, most …

Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness

P Garbeva, JA Van Veen… - Annu. Rev. Phytopathol …, 2004 - annualreviews.org
▪ Abstract An increasing interest has emerged with respect to the importance of microbial
diversity in soil habitats. The extent of the diversity of microorganisms in soil is seen to be …

Microbial diversity and soil functions

P Nannipieri, J Ascher, MT Ceccherini… - European journal of …, 2003 - Wiley Online Library
Soil is a complex and dynamic biological system, and still in 2003 it is difficult to determine
the composition of microbial communities in soil. We are also limited in the determination of …

Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms

KK Brandt, A Amézquita, T Backhaus, A Boxall… - Environment …, 2015 - Elsevier
Antibiotics play a pivotal role in the management of infectious disease in humans,
companion animals, livestock, and aquaculture operations at a global scale. Antibiotics are …

Natural products from plant-associated microorganisms: distribution, structural diversity, bioactivity, and implications of their occurrence

AAL Gunatilaka - Journal of natural products, 2006 - ACS Publications
A growing body of evidence suggests that plant-associated microorganisms, especially
endophytic and rhizosphere bacteria and fungi, represent a huge and largely untapped …

[HTML][HTML] Gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models

J Zimmermann, C Kaleta, S Waschina - Genome biology, 2021 - Springer
Genome-scale metabolic models of microorganisms are powerful frameworks to predict
phenotypes from an organism's genotype. While manual reconstructions are laborious …

A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial …

CD Campbell, SJ Chapman, CM Cameron… - Applied and …, 2003 - Am Soc Microbiol
Sole-carbon-source tests (Biolog), designed to identify bacteria, have become very popular
for metabolically fingerprinting soil microbial communities, despite disadvantages …

Enzyme activities and microbiological and biochemical processes in soil

P Nannipieri, E Kandeler… - Enzymes in the …, 2002 - books.google.com
It is well known that soil organisms, particularly microbiota, play an essential role in the
cycling of elements and stabilization of soil structure (1, 2). The mineralization of organic …

Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils

MS Girvan, J Bullimore, JN Pretty… - Applied and …, 2003 - Am Soc Microbiol
Degradation of agricultural land and the resulting loss of soil biodiversity and productivity
are of great concern. Land-use management practices can be used to ameliorate such …

DGGE/TGGE a method for identifying genes from natural ecosystems

G Muyzer - Current opinion in microbiology, 1999 - Elsevier
Five years after the introduction of denaturing gradient gel electrophoresis (DGGE) and
temperature gradient gel electrophoresis (TGGE) in environmental microbiology these …