It'sa DoG-eat-DoG world—altered transcriptional mechanisms drive downstream-of-gene (DoG) transcript production

M Morgan, R Shiekhattar, A Shilatifard, SM Lauberth - Molecular cell, 2022 - cell.com
The past decade has revolutionized our understanding of regulatory noncoding RNAs
(ncRNAs). Among the most recently identified ncRNAs are downstream-of-gene (DoG) …

The Thermal Stress Coping Network of the Nematode Caenorhabditis elegans

E Kyriakou, E Taouktsi, P Syntichaki - International journal of molecular …, 2022 - mdpi.com
Response to hyperthermia, highly conserved from bacteria to humans, involves
transcriptional upregulation of genes involved in battling the cytotoxicity caused by …

Changes to the TDP-43 and FUS Interactomes Induced by DNA Damage

T Kawaguchi, MG Rollins, M Moinpour… - Journal of proteome …, 2019 - ACS Publications
The RNA-binding proteins TDP-43 and FUS are tied as the third leading known genetic
cause for amyotrophic lateral sclerosis (ALS), and TDP-43 proteopathies are found in nearly …

Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons

SEJ Fischer, G Ruvkun - Proceedings of the National …, 2020 - National Acad Sciences
Endogenous retroviruses and long terminal repeat (LTR) retrotransposons are mobile
genetic elements that are closely related to retroviruses. Desilenced endogenous …

ARTDeco: a utomatic r eadthrough t ranscription de te c ti on

SJ Roth, S Heinz, C Benner - Bmc Bioinformatics, 2020 - Springer
Background Mounting evidence suggests several diseases and biological processes target
transcription termination to misregulate gene expression. Disruption of transcription …

Remodeling of the Caenorhabditis elegans non-coding RNA transcriptome by heat shock

WP Schreiner, DC Pagliuso, JM Garrigues… - Nucleic acids …, 2019 - academic.oup.com
Elevated temperatures activate a heat shock response (HSR) to protect cells from the
pathological effects of protein mis-folding, cellular mis-organization, organelle dysfunction …

What about the males? the C. elegans sexually dimorphic nervous system and a CRISPR-based tool to study males in a hermaphroditic species

JD Walsh, O Boivin, MM Barr - Nature's Gift to Neuroscience, 2022 - taylorfrancis.com
Sexual dimorphism is a device that supports genetic diversity while providing selective
pressure against speciation. This phenomenon is at the core of sexually reproducing …

Simple models to understand complex disease: 10 years of progress from Caenorhabditis elegans models of amyotrophic lateral sclerosis and frontotemporal lobar …

RJ Eck, JG Stair, BC Kraemer… - Frontiers in Neuroscience, 2024 - frontiersin.org
The nematode Caenorhabditis elegans are a powerful model system to study human
disease, with numerous experimental advantages including significant genetic and cellular …

Differential effects of pre-mRNA splicing inhibitors on RNA polymerase II transcription

M Tellier, G Ansa, S Murphy - bioRxiv, 2023 - biorxiv.org
The production of eukaryotic mRNA requires transcription by RNA polymerase (pol) II and co-
transcriptional processing, including capping, splicing, and cleavage and polyadenylation …

RNA Sequencing Experimental Analysis Workflow Using Caenorhabditis elegans

J Robledo, SR Nahar, MA Ruiz, RJ Hendricks… - Transcriptome Data …, 2024 - Springer
RNA sequencing is an approach to transcriptomic profiling that enables the detection of
differentially expressed genes in response to genetic mutation or experimental treatment …