Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape

L Zappia, FJ Theis - Genome biology, 2021 - Springer
Recent years have seen a revolution in single-cell RNA-sequencing (scRNA-seq)
technologies, datasets, and analysis methods. Since 2016, the scRNA-tools database has …

The use of machine learning to discover regulatory networks controlling biological systems

R Erbe, J Gore, K Gemmill, DA Gaykalova, EJ Fertig - Molecular cell, 2022 - cell.com
Biological systems are composed of a vast web of multiscale molecular interactors and
interactions. High-throughput technologies, both bulk and single cell, now allow for …

TIME AND CAUSALITY IN GENOMICS DATA

R Erbe - 2023 - jscholarship.library.jhu.edu
The ability to sequence the genomic information that describes individual cell states has
provided enormous insight into biological systems. However, to sequence the genomic …