[HTML][HTML] Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence

X Liu, Y Liu, J Liu, H Zhang, C Shan… - Neural Regeneration …, 2024 - journals.lww.com
A growing body of evidence suggests that the gut microbiota contributes to the development
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …

Knowing and naming: phage annotation and nomenclature for phage therapy

SR Grigson, SK Giles, RA Edwards… - Clinical Infectious …, 2023 - academic.oup.com
Bacteriophages, or phages, are viruses that infect bacteria shaping microbial communities
and ecosystems. They have gained attention as potential agents against antibiotic …

Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus

SN Inwood, J Skelly, JG Guhlin, TWR Harrop… - BMC genomics, 2023 - Springer
Background Biocontrol is a key technology for the control of pest species. Microctonus
parasitoid wasps (Hymenoptera: Braconidae) have been released in Aotearoa New Zealand …

[PDF][PDF] Sousa

RCM PEREIRA - PA Fatores de mortalidade de micro e pequenas, 2018 - researchgate.net
The increasing availability of expressive quantities of human viral sequenced samples,
namely from clinical and forensic contexts, has led to the emergence of many optimized …

Hecatomb: an integrated software platform for viral metagenomics

MJ Roach, SJ Beecroft, KA Mihindukulasuriya… - …, 2024 - academic.oup.com
Background Modern sequencing technologies offer extraordinary opportunities for virus
discovery and virome analysis. Annotation of viral sequences from metagenomic data …

AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data

R Yu, D Cai, Y Sun - Bioinformatics, 2023 - academic.oup.com
Motivation RNA viruses tend to mutate constantly. While many of the variants are neutral,
some can lead to higher transmissibility or virulence. Accurate assembly of complete viral …

Structural and Functional Disparities within the Human Gut Virome in Terms of Genome Topology and Representative Genome Selection

WP Veldsman, C Yang, Z Zhang, Y Huang… - Viruses, 2024 - mdpi.com
Circularity confers protection to viral genomes where linearity falls short, thereby fulfilling the
form follows function aphorism. However, a shift away from morphology-based classification …

[HTML][HTML] Developing pangenomes for large and complex plant genomes and their representation formats

P Ruperao, P Rangan, T Shah, V Sharma… - Journal of Advanced …, 2025 - Elsevier
Background The development of pangenomes has revolutionized genomic studies by
capturing the complete genetic diversity within a species. Pangenome assembly integrates …

[HTML][HTML] Are You My Host? An Overview of Methods Used to Link Bacteriophages with Hosts

P Hyman - Viruses, 2025 - mdpi.com
Until recently, the only methods for finding out if a particular strain or species of bacteria
could be a host for a particular bacteriophage was to see if the bacteriophage could infect …

Complete genome sequence of Stutzerimonas stutzeri strain SOCE 002, a Marine Bacterium isolated from the Surface seawater of Dapeng Bay

J Guo, S Xu, Y Liu, C Zhang, S Hou - Microbiology Resource …, 2023 - Am Soc Microbiol
We report the complete genome sequence of Stutzerimonas stutzeri strain SOCE 002,
obtained from Illumina and Oxford Nanopore sequencing. The genome is 4.68 Mb long, with …