A comprehensive review of bio-inspired optimization algorithms including applications in microelectronics and nanophotonics

Z Jakšić, S Devi, O Jakšić, K Guha - Biomimetics, 2023 - mdpi.com
The application of artificial intelligence in everyday life is becoming all-pervasive and
unavoidable. Within that vast field, a special place belongs to biomimetic/bio-inspired …

Recent advances in β-glucosidase sequence and structure engineering: a brief review

B Ouyang, G Wang, N Zhang, J Zuo, Y Huang, X Zhao - Molecules, 2023 - mdpi.com
β-glucosidases (BGLs) play a crucial role in the degradation of lignocellulosic biomass as
well as in industrial applications such as pharmaceuticals, foods, and flavors. However, the …

A survey on the algorithm and development of multiple sequence alignment

Y Zhang, Q Zhang, J Zhou, Q Zou - Briefings in bioinformatics, 2022 - academic.oup.com
Multiple sequence alignment (MSA) is an essential cornerstone in bioinformatics, which can
reveal the potential information in biological sequences, such as function, evolution and …

[HTML][HTML] Grey Wolf Optimization algorithm with random local optimal regulation and first-element dominance

X Yanzhuang, X Shibin - Egyptian Informatics Journal, 2024 - Elsevier
Due to the classical Grey Wolf algorithm GWO does not consider the characteristics of the
local information of individual in population, a novel local random optimization strategy is …

Explaining and predicting allostery with allosteric database and modern analytical techniques

J Zha, M Li, R Kong, S Lu, J Zhang - Journal of Molecular Biology, 2022 - Elsevier
Allostery is a phenomenon that the protein activity is regulated when a non-functional site on
it is bounded. This phenomenon is important in life process and disease therapy. However, it …

Enhanced Genetic Method for Optimizing Multiple Sequence Alignment

MK Ibrahim, UK Yusof, TAE Eisa, M Nasser - Mathematics, 2023 - mdpi.com
In the realm of bioinformatics, Multiple Sequence Alignment (MSA) is a pivotal technique
used to optimize the alignment of multiple biological sequences, guided by specific scoring …

fastmsa: Accelerating multiple sequence alignment with dense retrieval on protein language

L Hong, S Sun, L Zheng, Q Tan, Y Li - bioRxiv, 2021 - biorxiv.org
Evolutionarily related sequences provide information for the protein structure and function.
Multiple sequence alignment, which includes homolog searching from large databases and …

Bioinspired Algorithms for Multiple Sequence Alignment: A Systematic Review and Roadmap

MK Ibrahim, UK Yusof, TAE Eisa, M Nasser - Applied Sciences, 2024 - mdpi.com
Multiple Sequence Alignment (MSA) plays a pivotal role in bioinformatics, facilitating various
critical biological analyses, including the prediction of unknown protein structures and …

[PDF][PDF] Solving multiple sequence alignment problems by using a swarm intelligent optimization based approach

T Paruchuri, GR Kancharla, S Dara - Int. J. Electr. Comput. Eng, 2023 - academia.edu
In this article, the alignment of multiple sequences is examined through swarm intelligence
based an improved particle swarm optimization (PSO). A random heuristic technique for …

Accelerating Multiple Sequence Alignments Using Parallel Computing

Q Bani Baker, RA Al-Hussien, M Al-Ayyoub - Computation, 2024 - mdpi.com
Multiple sequence alignment (MSA) stands as a critical tool for understanding the
evolutionary and functional relationships among biological sequences. Obtaining an exact …