Machine learning in materials genome initiative: A review

Y Liu, C Niu, Z Wang, Y Gan, Y Zhu, S Sun… - Journal of Materials …, 2020 - Elsevier
Discovering new materials with excellent performance is a hot issue in the materials
genome initiative. Traditional experiments and calculations often waste large amounts of …

[HTML][HTML] Critical updates on chronic hepatitis B virus infection in 2021

CA Philips, R Ahamed, JK Abduljaleel, S Rajesh… - Cureus, 2021 - ncbi.nlm.nih.gov
Chronic hepatitis B virus (HBV) infection is a global healthcare burden in the form of chronic
liver disease, cirrhosis, liver failure and liver cancer. There is no definite cure for the virus …

An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

S Solis-Reyes, M Avino, A Poon, L Kari - PloS one, 2018 - journals.plos.org
For many disease-causing virus species, global diversity is clustered into a taxonomy of
subtypes with clinical significance. In particular, the classification of infections among the …

ML-DSP: Machine Learning with Digital Signal Processing for ultrafast, accurate, and scalable genome classification at all taxonomic levels

GS Randhawa, KA Hill, L Kari - BMC genomics, 2019 - Springer
Background Although software tools abound for the comparison, analysis, identification, and
classification of genomic sequences, taxonomic classification remains challenging due to …

[HTML][HTML] Bioinformatics of virus taxonomy: foundations and tools for developing sequence-based hierarchical classification

AE Gorbalenya, C Lauber - Current Opinion in Virology, 2022 - Elsevier
Highlights•The genome sequence is the only characteristic readily obtainable for all
viruses.•Comparative genomics enables building hierarchical classification for virus …

Unlocking the microbial studies through computational approaches: how far have we reached?

R Kumar, G Yadav, M Kuddus, GM Ashraf… - … Science and Pollution …, 2023 - Springer
The metagenomics approach accelerated the study of genetic information from uncultured
microbes and complex microbial communities. In silico research also facilitated an …

ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data

HJ Gwak, M Rho - Briefings in Bioinformatics, 2022 - academic.oup.com
Viruses are ubiquitous in humans and various environments and continually mutate
themselves. Identifying viruses in an environment without cultivation is challenging; …

Efficient tree classifiers for large scale datasets

F Wang, Q Wang, F Nie, W Yu, R Wang - Neurocomputing, 2018 - Elsevier
Classification plays a significant role in production activities and lives. In this era of big data,
it is especially important to design efficient classifiers with high classification accuracy for …

[HTML][HTML] VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment

RS Raju, A Al Nahid, PC Dev, R Islam - Genomics, 2022 - Elsevier
Classification of viruses into their taxonomic ranks (eg, order, family, and genus) provides a
framework to organize an abundant population of viruses. Next-generation metagenomic …

Recent advances in understanding, diagnosing, and treating hepatitis B virus infection

M Rybicka, KP Bielawski - Microorganisms, 2020 - mdpi.com
Chronic hepatitis B virus (HBV) infection affects 292 million people worldwide and is
associated with a broad range of clinical manifestations including cirrhosis, liver failure, and …