Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations

JJ Salk, MW Schmitt, LA Loeb - Nature Reviews Genetics, 2018 - nature.com
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …

[HTML][HTML] The molecular characteristics of colorectal cancer: Implications for diagnosis and therapy

HT Nguyen, HQ Duong - Oncology letters, 2018 - spandidos-publications.com
Colorectal cancer (CRC) results from the progressive accumulation of multiple genetic and
epigenetic aberrations within cells. The progression from colorectal adenoma to carcinoma …

Timing, rates and spectra of human germline mutation

R Rahbari, A Wuster, SJ Lindsay, RJ Hardwick… - Nature …, 2016 - nature.com
Germline mutations are a driving force behind genome evolution and genetic disease. We
investigated genome-wide mutation rates and spectra in multi-sibling families. The mutation …

Unexpected mutations after CRISPR–Cas9 editing in vivo

KA Schaefer, WH Wu, DF Colgan, SH Tsang… - Nature …, 2017 - nature.com
CRISPR–Cas9 editing shows promise for correcting disease-causing mutations. For
example, in a recent study we used CRISPR-Cas9 for sight restoration in blind rd1 mice by …

Advancements in next-generation sequencing

SE Levy, RM Myers - Annual review of genomics and human …, 2016 - annualreviews.org
The term next-generation sequencing is almost a decade old, but it remains the colloquial
way to describe highly parallel or high-output sequencing methods that produce data at or …

Genetic and chemotherapeutic influences on germline hypermutation

J Kaplanis, B Ide, R Sanghvi, M Neville, P Danecek… - Nature, 2022 - nature.com
Mutations in the germline generates all evolutionary genetic variation and is a cause of
genetic disease. Parental age is the primary determinant of the number of new germline …

The complete genome sequence of a Neanderthal from the Altai Mountains

K Prüfer, F Racimo, N Patterson, F Jay… - Nature, 2014 - nature.com
We present a high-quality genome sequence of a Neanderthal woman from Siberia. We
show that her parents were related at the level of half-siblings and that mating among close …

Ancient gene flow from early modern humans into Eastern Neanderthals

M Kuhlwilm, I Gronau, MJ Hubisz, C De Filippo… - Nature, 2016 - nature.com
It has been shown that Neanderthals contributed genetically to modern humans outside
Africa 47,000–65,000 years ago. Here we analyse the genomes of a Neanderthal and a …

New insights into the generation and role of de novo mutations in health and disease

R Acuna-Hidalgo, JA Veltman, A Hoischen - Genome biology, 2016 - Springer
Aside from inheriting half of the genome of each of our parents, we are born with a small
number of novel mutations that occurred during gametogenesis and postzygotically. Recent …

Rate of de novo mutations and the importance of father's age to disease risk

A Kong, ML Frigge, G Masson, S Besenbacher… - Nature, 2012 - nature.com
Mutations generate sequence diversity and provide a substrate for selection. The rate of de
novo mutations is therefore of major importance to evolution. Here we conduct a study of …