Third generation antibody discovery methods: in silico rational design

P Sormanni, FA Aprile, M Vendruscolo - Chemical Society Reviews, 2018 - pubs.rsc.org
Owing to their outstanding performances in molecular recognition, antibodies are
extensively used in research and applications in molecular biology, biotechnology and …

Development and differentiation in monobodies based on the fibronectin type 3 domain

PG Chandler, AM Buckle - Cells, 2020 - mdpi.com
As a non-antibody scaffold, monobodies based on the fibronectin type III (FN3) domain
overcome antibody size and complexity while maintaining analogous binding loops …

A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties

AB Waight, D Prihoda, R Shrestha, K Metcalf, M Bailly… - MAbs, 2023 - Taylor & Francis
Identification of favorable biophysical properties for protein therapeutics as part of
developability assessment is a crucial part of the preclinical development process …

AggScore: prediction of aggregation‐prone regions in proteins based on the distribution of surface patches

K Sankar, SR Krystek Jr, SM Carl… - Proteins: Structure …, 2018 - Wiley Online Library
Protein aggregation is a phenomenon that has attracted considerable attention within the
pharmaceutical industry from both a developability standpoint (to ensure stability of protein …

Assessment of therapeutic antibody developability by combinations of in vitro and in silico methods

AM Wolf Pérez, N Lorenzen, M Vendruscolo… - … Antibodies: Methods and …, 2022 - Springer
Although antibodies have become the fastest-growing class of therapeutics on the market, it
is still challenging to develop them for therapeutic applications, which often require these …

Exploring the relationships between protein sequence, structure and solubility

K Trainor, A Broom, EM Meiering - Current opinion in structural biology, 2017 - Elsevier
Aggregation can be thought of as a form of protein folding in which intermolecular
associations lead to the formation of large, insoluble assemblies. Various types of …

Peptides as potential therapeutics for Alzheimer's disease

S Ribarič - Molecules, 2018 - mdpi.com
Intracellular synthesis, folding, trafficking and degradation of proteins are controlled and
integrated by proteostasis. The frequency of protein misfolding disorders in the human …

[HTML][HTML] Engineering stability, viscosity, and immunogenicity of antibodies by computational design

D Kuroda, K Tsumoto - Journal of Pharmaceutical Sciences, 2020 - Elsevier
In recent years, computational methods have garnered much attention in protein
engineering. A large number of computational methods have been developed to analyze the …

A descriptor set for quantitative structure‐property relationship prediction in biologics

K Sankar, K Trainor, LL Blazer, JJ Adams… - Molecular …, 2022 - Wiley Online Library
There has been a remarkable increase in the number of biologics, especially monoclonal
antibodies, in the market over the last decade. In addition to attaining the desired binding to …

Charge and hydrophobicity are key features in sequence-trained machine learning models for predicting the biophysical properties of clinical-stage antibodies

M Hebditch, J Warwicker - PeerJ, 2019 - peerj.com
Improved understanding of properties that mediate protein solubility and resistance to
aggregation are important for developing biopharmaceuticals, and more generally in …