[HTML][HTML] Conserved human effector Treg cell transcriptomic and epigenetic signature in arthritic joint inflammation

G Mijnheer, L Lutter, M Mokry, M van der Wal… - Nature …, 2021 - nature.com
Treg cells are critical regulators of immune homeostasis, and environment-driven Treg cell
differentiation into effector (e) Treg cells is crucial for optimal functioning. However, human …

[HTML][HTML] Multi-omic analyses reveal the unique properties of chia (Salvia hispanica) seed metabolism

G Alejo-Jacuinde, HR Nájera-González… - Communications …, 2023 - nature.com
Chia (Salvia hispanica) is an emerging crop considered a functional food containing
important substances with multiple potential applications. However, the molecular basis of …

[HTML][HTML] Finding gene regulatory networks in psoriasis: Application of a tree-based machine learning approach

J Deng, C Schieler, JAM Borghans, C Lu… - Frontiers in …, 2022 - frontiersin.org
Psoriasis is a chronic inflammatory skin disorder. Although it has been studied extensively,
the molecular mechanisms driving the disease remain unclear. In this study, we utilized a …

[HTML][HTML] Distinct patterns of proteostasis network gene expression are associated with different prognoses in melanoma patients

R Wellman, D Jacobson, M Secrier, J Labbadia - Scientific Reports, 2024 - nature.com
The proteostasis network (PN) is a collection of protein folding and degradation pathways
that spans cellular compartments and acts to preserve the integrity of the proteome. The …

[HTML][HTML] Transcriptomic analysis identifies lactoferrin-induced quiescent circuits in neonatal macrophages

M Eigenschink, I Wessely, M Dijmarescu… - Frontiers in …, 2023 - frontiersin.org
Introduction Upon birth, a hitherto naïve immune system is confronted with a plethora of
microbial antigens due to intestinal bacterial colonization. To prevent excessive …

[HTML][HTML] Leukocyte-associated immunoglobulin-like receptor-1 blockade in combination with programmed death-ligand 1 targeting therapy mediates increased tumour …

A Singh, ETAM Mommers-Elshof, SV Vijver… - Cancer Immunology …, 2024 - Springer
Collagen expression and structure in the tumour microenvironment are associated with
tumour development and therapy response. Leukocyte-associated immunoglobulin-like …

Compartment-driven imprinting of intestinal CD4 T cells in inflammatory bowel disease and homeostasis

L Lutter, JJM Ter Linde, EC Brand… - Clinical and …, 2023 - academic.oup.com
The mucosal immune system is implicated in the etiology and progression of inflammatory
bowel diseases. The lamina propria and epithelium of the gut mucosa constitute two …

Proteomics and phosphoproteomics profiling of drug-Addicted BRAFi-resistant melanoma cells

B Li, X Kong, H Post, L Raaijmakers… - Journal of proteome …, 2021 - ACS Publications
Acquired resistance to MAPK inhibitors limits the clinical efficacy in melanoma treatment. We
and others have recently shown that BRAF inhibitor (BRAFi)-resistant melanoma cells can …

Identification of transcriptional regulators using a combined disease module identification and prize-collecting Steiner tree approach

G Galindez, BA Lopez, DB Blumenthal, T Kacprowski - bioRxiv, 2024 - biorxiv.org
Transcription factors play important roles in maintaining normal biological function, and their
dysregulation can lead to the development of diseases. Identifying candidate transcription …

A systems biology approach to uncover key genes and pathways mediating progression of leukoplakia to primary oral squamous cell carcinoma

A Taherkhani, G Moradifar, Z Bayat, P Samadi… - Journal of Oral and …, 2024 - Elsevier
Objective Oral squamous cell carcinoma (OSCC) counts for 90% of pathology in oral cavity
cancer. Oral leukoplakia is the most frequent type of pre-invasive lesion leading to OSCC …