Evolution and implications of de novo genes in humans

LA Broeils, J Ruiz-Orera, B Snel, N Hubner… - Nature ecology & …, 2023 - nature.com
Genes and translated open reading frames (ORFs) that emerged de novo from previously
non-coding sequences provide species with opportunities for adaptation. When aberrantly …

LncRNA-encoded peptide: functions and predicting methods

J Xing, H Liu, W Jiang, L Wang - Frontiers in oncology, 2021 - frontiersin.org
Long non-coding RNA (lncRNA) was originally defined as the representative of the non-
coding RNAs and unable to encode. However, recent reports suggest that some lncRNAs …

Standardized annotation of translated open reading frames

JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet… - Nature …, 2022 - nature.com
To the Editor—Ribosome profiling (Ribo-seq) has extended our understanding of the
translational 'vocabulary'of the human genome, uncovering thousands of open reading …

What can ribo-seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?

JR Prensner, JG Abelin, LW Kok, KR Clauser… - Molecular & Cellular …, 2023 - ASBMB
Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Functional micropeptides encoded by long non-coding RNAs: a comprehensive review

J Pan, R Wang, F Shang, R Ma, Y Rong… - Frontiers in molecular …, 2022 - frontiersin.org
Long non-coding RNAs (lncRNAs) were originally defined as non-coding RNAs (ncRNAs)
which lack protein-coding ability. However, with the emergence of technologies such as …

Long noncoding RNAs in human stemness and differentiation

FM Azad, IL Polignano, V Proserpio, S Oliviero - Trends in Cell Biology, 2021 - cell.com
There is increasing evidence that long noncoding RNAs (lncRNAs) are among the main
regulatory factors of stem cell maintenance and differentiation. They act through various …

A microprotein N1DARP encoded by LINC00261 promotes Notch1 intracellular domain (N1ICD) degradation via disrupting USP10-N1ICD interaction to inhibit …

S Zhai, J Lin, Y Ji, R Zhang, Z Zhang, Y Cao, Y Liu… - Cell Discovery, 2023 - nature.com
The extensively activated Notch signaling pathway in pancreatic cancer cells is important in
carcinogenesis, chemoresistance, and recurrence. Targeting this pathway is a promising …

CRISPR-based approaches for the high-throughput characterization of long non-coding RNAs

J Hazan, AC Bester - Non-coding RNA, 2021 - mdpi.com
Over the last decade, tens of thousands of new long non-coding RNAs (lncRNAs) have been
identified in the human genome. Nevertheless, except for a handful of genes, the genetic …

Emerging potential of immunopeptidomics by mass spectrometry in cancer immunotherapy

Y Minegishi, Y Haga, K Ueda - Cancer Science, 2024 - Wiley Online Library
With significant advances in analytical technologies, research in the field of cancer
immunotherapy, such as adoptive T cell therapy, cancer vaccine, and immune checkpoint …