Forward and inverse problems in the mechanics of soft filaments

M Gazzola, LH Dudte… - Royal Society …, 2018 - royalsocietypublishing.org
Soft slender structures are ubiquitous in natural and artificial systems, in active and passive
settings and across scales, from polymers and flagella, to snakes and space tethers. In this …

Hydrodynamics of a twisting, bending, inextensible fiber in Stokes flow

O Maxian, B Sprinkle, CS Peskin, A Donev - Physical Review Fluids, 2022 - APS
In swimming microorganisms and the cell cytoskeleton, inextensible fibers resist bending
and twisting, and interact with the surrounding fluid to cause or resist large-scale fluid …

Slender body theories for rotating filaments

O Maxian, A Donev - Journal of Fluid Mechanics, 2022 - cambridge.org
Slender fibres are ubiquitous in biology, physics and engineering, with prominent examples
including bacterial flagella and cytoskeletal fibres. In this setting, slender body theories …

Locomotion of a single-flagellated bacterium

Y Park, Y Kim, S Lim - Journal of Fluid Mechanics, 2019 - cambridge.org
Single-flagellated bacteria propel themselves by rotating a flagellar motor, translating
rotation to the filament through a compliant hook and subsequently driving the rotation of the …

Bacterial flagellar bundling and unbundling via polymorphic transformations

W Lee, Y Kim, BE Griffith, S Lim - Physical Review E, 2018 - APS
Multiflagellated bacteria such as E. coli exploit the polymorphic transformations of helical
flagella to explore their fluid environment. In these bacteria, a sequence of polymorphic …

Flagellated bacteria swim in circles near a rigid wall

Y Park, Y Kim, S Lim - Physical Review E, 2019 - APS
The rotation of bacterial flagella driven by rotary motors enables the cell to swim through
fluid. Bacteria run and reorient by changing the rotational direction of the motor for survival …

A three-dimensional model of flagellar swimming in a Brinkman fluid

NH Ho, K Leiderman, S Olson - Journal of Fluid Mechanics, 2019 - cambridge.org
We investigate three-dimensional flagellar swimming in a fluid with a sparse network of
stationary obstacles or fibres. The Brinkman equation is used to model the average fluid flow …

Emergent three-dimensional sperm motility: coupling calcium dynamics and preferred curvature in a Kirchhoff rod model

L Carichino, SD Olson - … medicine and biology: a journal of the …, 2019 - academic.oup.com
Abstract Changes in calcium concentration along the sperm flagellum regulate sperm
motility and hyperactivation, characterized by an increased flagellar bend amplitude and …

Self-buckling and self-writhing of semi-flexible microorganisms

W Lough, DB Weibel, SE Spagnolie - Soft Matter, 2023 - pubs.rsc.org
The twisting and writhing of a cell body and associated mechanical stresses is an
underappreciated constraint on microbial self-propulsion. Multi-flagellated bacteria can even …

Instabilities of a rotating helical rod in a viscous fluid

Y Park, Y Kim, W Ko, S Lim - Physical Review E, 2017 - APS
Bacteria such as Vibrio alginolyticus swim through a fluid by utilizing the rotational motion of
their helical flagellum driven by a rotary motor. The flagellar motor is embedded in the cell …