[HTML][HTML] Trophic interactions and the drivers of microbial community assembly

M Gralka, R Szabo, R Stocker, OX Cordero - Current Biology, 2020 - cell.com
Despite numerous surveys of gene and species content in heterotrophic microbial
communities, such as those found in animal guts, oceans, or soils, it is still unclear whether …

Venn diagrams in bioinformatics

A Jia, L Xu, Y Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and
distinctions among multiple datasets, and a large number of programs have been developed …

[HTML][HTML] Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

Y Shi, M Delgado-Baquerizo, Y Li, Y Yang… - Environment …, 2020 - Elsevier
Microbial taxa within complex ecological networks can be classified by their universal roles
based on their level of connectivity with other taxa. Highly connected taxa within an …

Applying the core microbiome to understand host–microbe systems

A Risely - Journal of Animal Ecology, 2020 - Wiley Online Library
The host‐associated core microbiome was originally coined to refer to common groups of
microbes or genes that were likely to be particularly important for host biological function …

[HTML][HTML] The fish microbiota: research progress and potential applications

Y Luan, M Li, W Zhou, Y Yao, Y Yang, Z Zhang… - Engineering, 2023 - Elsevier
The gut microbiota plays an important role in host health and disease. Our understanding of
the fish microbiota lags far behind our knowledge of that of humans and other mammals …

[HTML][HTML] Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics

O Furman, L Shenhav, G Sasson, F Kokou… - Nature …, 2020 - nature.com
How complex communities assemble through the animal's life, and how predictable the
process is remains unexplored. Here, we investigate the forces that drive the assembly of …

Microbial interactions drive the complete catabolism of the antibiotic sulfamethoxazole in activated sludge microbiomes

M Qi, B Liang, L Zhang, X Ma, L Yan… - Environmental …, 2021 - ACS Publications
Microbial communities are believed to outperform monocultures in the complete catabolism
of organic pollutants via reduced metabolic burden and increased robustness to …

Seed‐borne, endospheric and rhizospheric core microbiota as predictors of plant functional traits across rice cultivars are dominated by deterministic processes

J Guo, N Ling, Y Li, K Li, H Ning, Q Shen… - New …, 2021 - Wiley Online Library
A host‐plant and its associated microbiota depend on one another. However, the assembly
process and the functioning of host‐associated microbiota are poorly understood. Herein …

A systematic review of advances in intestinal microflora of fish

C Liu, LP Zhao, YQ Shen - Fish Physiology and Biochemistry, 2021 - Springer
Intestinal flora is closely related to the health of organisms and the occurrence and
development of diseases. The study of intestinal flora will provide a reference for the …

[HTML][HTML] Holo-omics: integrated host-microbiota multi-omics for basic and applied biological research

L Nyholm, A Koziol, S Marcos, AB Botnen, O Aizpurua… - Iscience, 2020 - cell.com
From ontogenesis to homeostasis, the phenotypes of complex organisms are shaped by the
bidirectional interactions between the host organisms and their associated microbiota …