An overview of modern applications of negative binomial modelling in ecology and biodiversity

J Stoklosa, RV Blakey, FKC Hui - Diversity, 2022 - mdpi.com
Negative binomial modelling is one of the most commonly used statistical tools for analysing
count data in ecology and biodiversity research. This is not surprising given the prevalence …

[HTML][HTML] Consistent effects of independent domestication events on the plant microbiota

R Soldan, M Fusi, M Cardinale, F Homma, LG Santos… - Current Biology, 2024 - cell.com
The effect of plant domestication on plant-microbe interactions remains difficult to prove. In
this study, we provide evidence of a domestication effect on the composition and abundance …

A comparison of joint species distribution models for percent cover data

P Korhonen, FKC Hui, J Niku… - Methods in Ecology …, 2024 - Wiley Online Library
Joint species distribution models (JSDMs) have gained considerable traction among
ecologists over the past decade, due to their capacity to answer a wide range of questions at …

Clustering and unconstrained ordination with Dirichlet process mixture models

C Stratton, A Hoegh, TJ Rodhouse… - Methods in Ecology …, 2024 - Wiley Online Library
Assessment of similarity in species composition or abundance across sampled locations is a
common goal in multi‐species monitoring programs. Existing ordination techniques provide …

Accelerating joint species distribution modelling with Hmsc-HPC by GPU porting

AU Rahman, G Tikhonov, J Oksanen… - PLOS Computational …, 2024 - journals.plos.org
Joint species distribution modelling (JSDM) is a widely used statistical method that analyzes
combined patterns of all species in a community, linking empirical data to ecological theory …

Palms predict the distributions of birds in southwestern Amazonia and are potential surrogates for land-use planning by citizen scientists

J Menger, S Santorelli Junior, T Emilio… - Biodiversity and …, 2024 - Springer
In the absence of high-quality biodiversity data, land-use planners and conservationists
often rely on biodiversity surrogates. Many studies have proposed surrogates based on …

Active Sampling and Understory Traps Can Cost-Effectively Detect Changes in Butterfly Communities after Hydroelectric Dam Construction

AC Santos, DLR Carmo, TGD Plaza, BA Arrua… - Diversity, 2022 - mdpi.com
(1) Background: Monitoring programs are essential to conservation but are often restricted
by limited financial resources. Optimal monitoring can lead to higher cost-effectiveness.(2) …

Rock glacier springs: cool habitats for species on the edge

J Martini, S Brighenti, M Vanek… - Biodiversity and …, 2024 - Springer
Under climate change, glacier recession and the loss of cold habitats are major threats to
aquatic biodiversity. In mountain areas, streams originating from rock glaciers, called “icy …

[HTML][HTML] Litter decomposition is positively related to soil fauna species richness especially in livestock-integrated agricultural fields

E Mamabolo, R Gaigher, JS Pryke - Applied Soil Ecology, 2024 - Elsevier
Litter decomposition is vital for the maintenance of soil health and long-term sustainability of
agricultural landscapes. Soil macro-and mesofauna facilitate decomposition and nutrient …

Characteristics of east Australian demersal trawl elasmobranch bycatch as revealed by short-term latitudinal monitoring

TC Barnes, DD Johnson - Endangered Species Research, 2023 - int-res.com
Elasmobranchs are being depleted on a global scale, caused mainly by fisheries. Demersal
trawling is a component of mortality but is often not assessed. This could pose risk to …